myRT

myRT report for GCA_003971565.1_ASM397156v1

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Seq: CP026503.1 Lactobacillus crispatus strain AB70 chromosome, complete genome (2351263 bp)
Overview 1 RT 1: 567835-573724 bp 2 RT 2: 672614-676382 bp 3 RT 3: 874984-881531 bp 4 RT 4: 905475-909591 bp 5 RT 5: 1008352-1013060 bp 6 RT 6: 1404703-1410948 bp Neighborhood of RT #1 [567835, 573795] Acyl_transf_3 PRK01237 RVT-GII GIIM GlpF PhoE Neighborhood of RT #2 [672614, 676382] DDE_Tnp_1_3 RVT-GII TIGR02452 SlpA Neighborhood of RT #3 [874984, 881680] DppB DppC RVT-GII GIIM BI-1-like_bacterial COG3666 DDE_Tnp_1 Neighborhood of RT #4 [905475, 909599] Tra8 group_II_RT_mat RVT-GII ribH PRK09311 Neighborhood of RT #5 [1008352, 1013065] scpB RsuA RVT-GII GIIM FmnP LysM Neighborhood of RT #6 [1404703, 1411238] DDE_5 InsG PBP2_Lactococcal_OppA_like RVT-GII GIIM LPXTG_anchor DDE_5 InsG Feature: gene Location: 567835-568953 bp Ori: AZR15036.1 Feature: domain Description: Acyl_transf_3 Location: 567883-568885 bp Feature: domain Description: Acyl_transf_3 Location: 567883-568885 bp Feature: gene Location: 569059-569877 bp Ori: AZR15037.1 Feature: domain Description: PRK01237 Location: 569065-569866 bp Feature: domain Description: PRK01 237 Location: 569065-569866 bp Feature: gene Location: 570474-571772 bp Ori: AZR15038.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 570675-571293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 570675-571 293 bp Feature: domain Description: GIIM Note: maturase Location: 571350-571557 bp Feature: domain Description: GIIM Note: maturase Location: 571 350-571 557 bp Feature: gene Location: 572055-572807 bp Ori: AZR15039.1 Feature: domain Description: GlpF Location: 572064-572796 bp Feature: domain Description: GlpF Location: 572064-572796 bp Feature: gene Location: 573229-573795 bp Ori: AZR15040.1 Feature: domain Description: PhoE Location: 573232-573724 bp Feature: domain Description: PhoE Location: 573232-573724 bp Feature: gene Location: 672614-673105 bp Feature: gene Location: 673123-673980 bp Ori: AZR15134.1 Feature: domain Description: DDE_Tnp_1_3 Location: 673456-673861 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 673456-673861 bp Feature: gene Location: 674190-674729 bp Ori: AZR15135.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 674193-674418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6741 93-67441 8 bp Feature: domain Description: TIGR02452 Location: 674553-674715 bp Feature: domain Description: TIGR02452 Location: 674553-67471 5 bp Feature: gene Location: 674814-675593 bp Ori: AZR15136.1 Feature: domain Description: SlpA Location: 675429-675585 bp Feature: domain Description: SlpA Location: 675429-675585 bp Feature: gene Location: 675789-676382 bp Feature: gene Location: 874984-875943 bp Ori: AZR15293.1 Feature: domain Description: DppB Location: 874987-875938 bp Feature: domain Description: DppB Location: 874987-875938 bp Feature: gene Location: 875958-876887 bp Ori: AZR15294.1 Feature: domain Description: DppC Location: 876045-876882 bp Feature: domain Description: DppC Location: 876045-876882 bp Feature: gene Location: 877498-878796 bp Ori: AZR15295.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 877699-878317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 877699-87831 7 bp Feature: domain Description: GIIM Note: maturase Location: 878374-878581 bp Feature: domain Description: GIIM Note: maturase Location: 878374-878581 bp Feature: gene Location: 879059-879775 bp Feature: domain Description: BI-1-like_bacterial Location: 879116-879755 bp Feature: domain Description: BI-1 -like_bacterial Location: 8791 1 6-879755 bp Feature: gene Location: 879986-881680 bp Ori: AZR15296.1 Feature: domain Description: COG3666 Location: 880028-880463 bp Feature: domain Description: COG3666 Location: 880028-880463 bp Feature: domain Description: DDE_Tnp_1 Location: 880778-881531 bp Feature: domain Description: DDE_Tnp_1 Location: 880778-881 531 bp Feature: gene Location: 905475-906304 bp Feature: domain Description: Tra8 Location: 905505-906237 bp Feature: domain Description: Tra8 Location: 905505-906237 bp Feature: gene Location: 907059-907241 bp Ori: AZR15318.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 907092-907212 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 907092-90721 2 bp Feature: gene Location: 907292-907864 bp Ori: AZR15319.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 907298-907448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 907298-907448 bp Feature: gene Location: 907942-908406 bp Ori: AZR15320.1 Feature: domain Description: ribH Location: 907945-908401 bp Feature: domain Description: ribH Location: 907945-908401 bp Feature: gene Location: 908421-909599 bp Ori: AZR15321.1 Feature: domain Description: PRK09311 Location: 908430-909591 bp Feature: domain Description: PRK0931 1 Location: 908430-909591 bp Feature: gene Location: 1008352-1008942 bp Ori: AZR15400.1 Gene: scpB Feature: domain Description: scpB Location: 1008361-1008910 bp Feature: domain Description: scpB Location: 1 008361 -1 00891 0 bp Feature: gene Location: 1008946-1009662 bp Ori: AZR15401.1 Feature: domain Description: RsuA Location: 1008952-1009657 bp Feature: domain Description: RsuA Location: 1 008952-1 009657 bp Feature: gene Location: 1010415-1011713 bp Ori: AZR15402.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1010616-1011234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 061 6-1 01 1 234 bp Feature: domain Description: GIIM Note: maturase Location: 1011291-1011498 bp Feature: domain Description: GIIM Note: maturase Location: 1 01 1 291 -1 01 1 498 bp Feature: gene Location: 1011813-1012502 bp Ori: AZR15403.1 Feature: domain Description: FmnP Location: 1011846-1012470 bp Feature: domain Description: FmnP Location: 1 01 1 846-1 01 2470 bp Feature: gene Location: 1012604-1013065 bp Ori: AZR15404.1 Feature: domain Description: LysM Location: 1012928-1013060 bp Feature: domain Description: LysM Location: 1 01 2928-1 01 3060 bp Feature: gene Location: 1404703-1406052 bp Ori: AZR15764.1 Feature: domain Description: DDE_5 Location: 1404901-1405468 bp Feature: domain Description: DDE_5 Location: 1 404901 -1 405468 bp Feature: domain Description: InsG Location: 1405489-1405762 bp Feature: domain Description: InsG Location: 1 405489-1 405762 bp Feature: gene Location: 1406125-1407090 bp Feature: domain Description: PBP2_Lactococcal_OppA_like Location: 1406281-1407091 bp Feature: domain Description: PBP2_Lactococcal_OppA_like Location: 1 406281 -1 407091 bp Feature: gene Location: 1407327-1408625 bp Ori: AZR15765.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1407528-1408146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 407528-1 4081 46 bp Feature: domain Description: GIIM Note: maturase Location: 1408203-1408410 bp Feature: domain Description: GIIM Note: maturase Location: 1 408203-1 40841 0 bp Feature: gene Location: 1409235-1409849 bp Ori: AZR15766.1 Feature: domain Description: LPXTG_anchor Location: 1409745-1409847 bp Feature: domain Description: LPXTG_anchor Location: 1 409745-1 409847 bp Feature: gene Location: 1409889-1411238 bp Ori: AZR15767.1 Feature: domain Description: DDE_5 Location: 1410087-1410654 bp Feature: domain Description: DDE_5 Location: 1 41 0087-1 41 0654 bp Feature: domain Description: InsG Location: 1410675-1410948 bp Feature: domain Description: InsG Location: 1 41 0675-1 41 0948 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acyl_transf_3 (pfam01757), PRK01237 (triphosphoribosyl-dephospho-CoA synthase; Validated), RVT-GII, GIIM (pfam08388), GlpF (COG0580), PhoE (COG0406), DDE_Tnp_1_3 (pfam13612), TIGR02452 (TIGR02452 family protein), SlpA (COG1047), DppB (COG0601)
DppC (COG1173), BI-1-like_bacterial (cd10432), COG3666 (Transposase ), DDE_Tnp_1 (pfam01609), Tra8 (COG2826), group_II_RT_mat (TIGR04416), ribH (PRK00061), PRK09311 (bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II), scpB (PRK00135), RsuA (COG1187)
FmnP (COG3601), LysM (smart00257), DDE_5 (pfam13546), InsG (COG3385), PBP2_Lactococcal_OppA_like (cd08510), LPXTG_anchor (TIGR01167)