myRT

myRT report for GCA_003990705.1_ASM399070v1

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Seq: AP018322.1 Nostoc sp. HK-01 plasmid plasmid4 DNA, complete genome (34721 bp)
Overview 1 RT 1: 4677-11509 bp Neighborhood of RT #1 [4677, 12306] Phage_int_SAM_1 INT_C_like_5 PDDEXK_7 RVT-Retrons AAA_5 AAA_10 Feature: gene Location: 4677-5699 bp Ori: BBD63530.1 Feature: domain Description: Phage_int_SAM_1 Location: 4812-5031 bp Feature: domain Description: Phage_int_SAM_1 Location: 481 2-5031 bp Feature: domain Description: INT_C_like_5 Location: 5145-5640 bp Feature: domain Description: INT_C_like_5 Location: 51 45-5640 bp Feature: gene Location: 5825-7915 bp Ori: BBD63531.1 Feature: domain Description: PDDEXK_7 Location: 6980-7295 bp Feature: domain Description: PDDEXK_7 Location: 6980-7295 bp Feature: gene Location: 7927-10188 bp Ori: BBD63532.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8041-8674 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8041 -8674 bp Feature: domain Description: AAA_5 Location: 9163-9466 bp Feature: domain Description: AAA_5 Location: 91 63-9466 bp Feature: gene Location: 10304-10543 bp Feature: gene Location: 10576-12306 bp Ori: BBD63534.1 Feature: domain Description: AAA_10 Location: 11365-11509 bp Feature: domain Description: AAA_1 0 Location: 1 1 365-1 1 509 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_1 (pfam02899), INT_C_like_5 (cd01195), PDDEXK_7 (pfam04411), RVT-Retrons, AAA_5 (pfam07728), AAA_10 (pfam12846)

Seq: AP018318.1 Nostoc sp. HK-01 DNA, complete genome (6494018 bp)
Overview 1 RT 1: 1059775-1067451 bp 2 RT 2: 2998260-3003419 bp 3 RT 3: 4298979-4304119 bp Neighborhood of RT #1 [1059775, 1067451] SPFH_eoslipins_u2 SPFH_eoslipins_u2 SPFH_eoslipins_u2 Ribonuc_L-PSP RVT-Retrons COG5659 Neighborhood of RT #2 [2998260, 3003427] Phd RVT-UG7 alaS CopZ Neighborhood of RT #3 [4298979, 4304119] COG5635 HEAT_2 HEAT_2 SEC21 HEAT_2 RVT-Retrons RVT-Retrons HNH Feature: gene Location: 1059775-1061298 bp Ori: BBD58101.1 Feature: domain Description: SPFH_eoslipins_u2 Location: 1059796-1059946 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 1059796-1059946 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 1060195-1060303 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 1060195-1060303 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 1060615-1061254 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 1060615-10612 54 bp Feature: gene Location: 1061701-1062273 bp Ori: BBD58102.1 Feature: domain Description: Ribonuc_L-PSP Location: 1061890-1062241 bp Feature: domain Description: Ribonuc_L-PSP Location: 1061890-1062 2 41 bp Feature: gene Location: 1063238-1064278 bp Ori: BBD58103.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1063421-1064033 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 106342 1-1064033 bp Feature: gene Location: 1064577-1065887 bp Ori: BBD58104.1 Feature: domain Description: COG5659 Location: 1064601-1065624 bp Feature: domain Description: COG5659 Location: 1064601-106562 4 bp Feature: gene Location: 1066507-1067451 bp Feature: gene Location: 2998260-2998499 bp Ori: BBD59771.1 Feature: domain Description: Phd Location: 2998263-2998488 bp Feature: domain Description: Phd Location: 2 9982 63-2 998488 bp Feature: gene Location: 2998581-2998877 bp Feature: gene Location: 2998881-3000125 bp Ori: BBD59773.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 2999259-2999682 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 2 9992 59-2 999682 bp Feature: gene Location: 3000265-3002907 bp Ori: BBD59774.1 Gene: alaS Feature: domain Description: alaS Location: 3000292-3002893 bp Feature: domain Description: alaS Location: 30002 92 -3002 893 bp Feature: gene Location: 3003227-3003427 bp Ori: BBD59775.1 Feature: domain Description: CopZ Location: 3003236-3003419 bp Feature: domain Description: CopZ Location: 30032 36-3003419 bp Feature: gene Location: 4298979-4300439 bp Ori: BBD60845.1 Feature: domain Description: COG5635 Location: 4299246-4300407 bp Feature: domain Description: COG5635 Location: 42 992 46-4300407 bp Feature: gene Location: 4300447-4301700 bp Ori: BBD60846.1 Feature: domain Description: HEAT_2 Location: 4300492-4300741 bp Feature: domain Description: HEAT_2 Location: 4300492 -4300741 bp Feature: domain Description: HEAT_2 Location: 4300762-4300936 bp Feature: domain Description: HEAT_2 Location: 4300762 -4300936 bp Feature: domain Description: SEC21 Location: 4300987-4301119 bp Feature: domain Description: SEC2 1 Location: 4300987-4301119 bp Feature: domain Description: HEAT_2 Location: 4301332-4301509 bp Feature: domain Description: HEAT_2 Location: 4301332 -4301509 bp Feature: gene Location: 4301790-4303097 bp Ori: BBD60847.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4302111-4302249 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4302 111-4302 2 49 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4302402-4302855 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4302 402 -4302 855 bp Feature: gene Location: 4303373-4303837 bp Ori: BBD60848.1 Feature: domain Description: HNH Note: nucleases Location: 4303442-4303583 bp Feature: domain Description: HNH Note: nucleases Location: 4303442 -4303583 bp Feature: gene Location: 4303841-4304119 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SPFH_eoslipins_u2 (cd13438), Ribonuc_L-PSP (pfam01042), RVT-Retrons, COG5659 (SRSO17 transposase ), Phd (COG4118), RVT-UG7, alaS (TIGR00344), CopZ (COG2608), COG5635 (Predicted NTPase, NACHT family domain ), HEAT_2 (pfam13646)
SEC21 (COG5240), HNH (pfam01844)

Seq: AP018320.1 Nostoc sp. HK-01 plasmid plasmid2 DNA, complete genome (311696 bp)
Overview 1 RT 1: 69569-75255 bp Neighborhood of RT #1 [69569, 75255] RVT_N RVT-GII McrA RVT_N RVT-GII GIIM HNHc Feature: gene Location: 69569-69769 bp Feature: gene Location: 69881-70330 bp Feature: gene Location: 70497-72083 bp Ori: BBD63210.1 Feature: domain Description: RVT_N Location: 70533-70776 bp Feature: domain Description: RVT_N Location: 7053 3 -70776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70830-71496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7083 0-71496 bp Feature: domain Description: McrA Location: 71727-72051 bp Feature: domain Description: McrA Location: 71727-72051 bp Feature: gene Location: 72522-74171 bp Ori: BBD63211.1 Feature: domain Description: RVT_N Location: 72573-72816 bp Feature: domain Description: RVT_N Location: 72573 -72816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72858-73473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72858-73 473 bp Feature: domain Description: GIIM Note: maturase Location: 73533-73758 bp Feature: domain Description: GIIM Note: maturase Location: 73 53 3 -73 758 bp Feature: domain Description: HNHc Note: nucleases Location: 73983-74142 bp Feature: domain Description: HNHc Note: nucleases Location: 73 983 -74142 bp Feature: gene Location: 74557-74844 bp Feature: gene Location: 74959-75255 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, McrA (COG4058), GIIM (pfam08388), HNHc (smart00507)

Seq: AP018319.1 Nostoc sp. HK-01 plasmid plasmid1 DNA, complete genome (484721 bp)
Overview 1 RT 1: 97661-105125 bp Neighborhood of RT #1 [97661, 105127] RVT-GII GIIM HNHc RVT_N RVT-GII CBS_two-component_sensor_histidine_kinase_repeat1 PRK11360 PAS PRK13557 DDE_Tnp_1_2 Feature: gene Location: 97661-97798 bp Feature: gene Location: 97990-98820 bp Feature: gene Location: 99091-100236 bp Ori: BBD62789.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99094-99517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99094 -99517 bp Feature: domain Description: GIIM Note: maturase Location: 99592-99826 bp Feature: domain Description: GIIM Note: maturase Location: 99592-99826 bp Feature: domain Description: HNHc Note: nucleases Location: 100036-100189 bp Feature: domain Description: HNHc Note: nucleases Location: 100036-100189 bp Feature: gene Location: 100208-100771 bp Ori: BBD62790.1 Feature: domain Description: RVT_N Location: 100256-100499 bp Feature: domain Description: RVT_N Location: 100256-1004 99 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100550-100730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100550-100730 bp Feature: gene Location: 101588-104074 bp Ori: BBD62791.1 Feature: domain Description: CBS_two-component_sensor_histidine_kinase_repeat1 Location: 101624-102011 bp Feature: domain Description: CBS_two-component_sensor_histidine_kinase_repeat1 Location: 101624 -102011 bp Feature: domain Description: PRK11360 Location: 102011-102416 bp Feature: domain Description: PRK11360 Location: 102011-1024 16 bp Feature: domain Description: PAS Location: 102584-102722 bp Feature: domain Description: PAS Location: 102584 -102722 bp Feature: domain Description: PRK13557 Location: 102857-104060 bp Feature: domain Description: PRK13557 Location: 102857-104 060 bp Feature: gene Location: 104651-105127 bp Ori: BBD62792.1 Feature: domain Description: DDE_Tnp_1_2 Location: 104873-105125 bp Feature: domain Description: DDE_Tnp_1_2 Location: 104 873-105125 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), RVT_N (pfam13655), CBS_two-component_sensor_histidine_kinase_repeat1 (cd04620), PRK11360 (two-component system sensor histidine kinase AtoS), PAS (smart00091), PRK13557 (histidine kinase; Provisional), DDE_Tnp_1_2 (pfam13586)