myRT

myRT report for GCA_003991465.1_ASM399146v1

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Seq: CP034409.1 Pseudomonas aeruginosa strain SP4527 chromosome, complete genome (7005215 bp)
Overview 1 RT 1: 4847097-4853498 bp 2 RT 2: 5975006-5985314 bp 3 RT 3: 6001572-6009766 bp Neighborhood of RT #1 [4847097, 4853521] DUF772 RVT-GII GIIM RVT_N RVT-GII GIIM IS5 EAL Neighborhood of RT #2 [5975006, 5985316] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #3 [6001572, 6009780] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 4847097-4847609 bp Feature: domain Description: DUF772 Location: 4847247-4847433 bp Feature: domain Description: DUF772 Location: 4847247-4847433 bp Feature: gene Location: 4847645-4847740 bp Feature: gene Location: 4848129-4849397 bp Ori: AZN15854.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4848342-4848999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4848342-4848999 bp Feature: domain Description: GIIM Note: maturase Location: 4849077-4849299 bp Feature: domain Description: GIIM Note: maturase Location: 4849077-4849299 bp Feature: gene Location: 4850073-4851578 bp Ori: AZN15855.1 Gene: ltrA Feature: domain Description: RVT_N Location: 4850154-4850379 bp Feature: domain Description: RVT_N Location: 48501 54-4850379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4850430-4851072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4850430-4851 072 bp Feature: domain Description: GIIM Note: maturase Location: 4851123-4851357 bp Feature: domain Description: GIIM Note: maturase Location: 4851 1 23-4851 357 bp Feature: gene Location: 4851651-4852109 bp Feature: domain Description: IS5 Location: 4851657-4852083 bp Feature: domain Description: IS5 Location: 4851 657-4852083 bp Feature: gene Location: 4852778-4853521 bp Ori: AZN15856.1 Feature: domain Description: EAL Location: 4852838-4853498 bp Feature: domain Description: EAL Location: 4852838-4853498 bp Feature: gene Location: 5975006-5976127 bp Ori: AZN16840.1 Feature: domain Description: COG3177 Location: 5975024-5976116 bp Feature: domain Description: COG31 77 Location: 5975024-59761 1 6 bp Feature: gene Location: 5976389-5976550 bp Feature: gene Location: 5976853-5978538 bp Ori: AZN16842.1 Gene: ltrA Feature: domain Description: RVT_N Location: 5976910-5977150 bp Feature: domain Description: RVT_N Location: 597691 0-59771 50 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5977198-5977834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59771 98-5977834 bp Feature: domain Description: GIIM Note: maturase Location: 5977888-5978119 bp Feature: domain Description: GIIM Note: maturase Location: 5977888-59781 1 9 bp Feature: domain Description: HNH Note: nucleases Location: 5978371-5978509 bp Feature: domain Description: HNH Note: nucleases Location: 5978371 -5978509 bp Feature: gene Location: 5979619-5983356 bp Ori: AZN16843.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 5979727-5980384 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 5979727-5980384 bp Feature: domain Description: PRK09776 Location: 5980597-5981068 bp Feature: domain Description: PRK09776 Location: 5980597-5981 068 bp Feature: domain Description: PAS Location: 5981113-5981650 bp Feature: domain Description: PAS Location: 5981 1 1 3-5981 650 bp Feature: domain Description: PRK10060 Location: 5981659-5983306 bp Feature: domain Description: PRK1 0060 Location: 5981 659-5983306 bp Feature: gene Location: 5983463-5985316 bp Ori: AZN16844.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 5983475-5985314 bp Feature: domain Description: PRK05658 Location: 5983475-598531 4 bp Feature: gene Location: 6001572-6002864 bp Ori: AZN16863.1 Feature: domain Description: PRK10770 Location: 6001662-6002856 bp Feature: domain Description: PRK1 0770 Location: 6001 662-6002856 bp Feature: gene Location: 6002845-6005646 bp Ori: AZN16864.1 Gene: lptD Feature: domain Description: LptD Location: 6003040-6005632 bp Feature: domain Description: LptD Location: 6003040-6005632 bp Feature: gene Location: 6005779-6007491 bp Ori: AZN16865.1 Gene: ltrA Feature: domain Description: RVT_N Location: 6005836-6006079 bp Feature: domain Description: RVT_N Location: 6005836-6006079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6006124-6006760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60061 24-6006760 bp Feature: domain Description: YkfC Location: 6006967-6007120 bp Feature: domain Description: YkfC Location: 6006967-60071 20 bp Feature: domain Description: HNH Note: nucleases Location: 6007297-6007435 bp Feature: domain Description: HNH Note: nucleases Location: 6007297-6007435 bp Feature: gene Location: 6007679-6007891 bp Feature: gene Location: 6008764-6009780 bp Ori: AZN16866.1 Feature: domain Description: COG3178 Location: 6008767-6009766 bp Feature: domain Description: COG31 78 Location: 6008767-6009766 bp Sorry, your 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Associated domains:myRT DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), RVT_N (pfam13655), IS5 (COG3039), EAL (smart00052), COG3177 (Fic family protein ), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )