myRT

myRT report for GCA_003991565.1_ASM399156v1

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Seq: CP032819.1 Butyricimonas faecalis strain H184 chromosome, complete genome (4925405 bp)
Overview 1 RT 1: 769658-775436 bp 2 RT 2: 1019313-1023246 bp 3 RT 3: 1183863-1189324 bp 4 RT 4: 2300266-2306918 bp 5 RT 5: 2622809-2628132 bp 6 RT 6: 3579641-3584971 bp 7 RT 7: 3612013-3615984 bp 8 RT 8: 3678671-3682606 bp 9 RT 9: 4584138-4589694 bp Neighborhood of RT #1 [769658, 775444] Mfa_like_1 YfmG YfmG RVT-DGRs HRDC BF2867_like_N YfmG Neighborhood of RT #2 [1019313, 1023246] RVT-UG27 Neighborhood of RT #3 [1183863, 1189350] PhoH PRK12607 RVT-GII GIIM Peptidase_S13 Exonuc_VII_S Neighborhood of RT #4 [2300266, 2306953] GlpC am_tr_V_EF2568 RVT-GII GIIM 2am3keto_CoA MutY Neighborhood of RT #5 [2622809, 2628146] DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Neighborhood of RT #6 [3579641, 3584971] DDE_Tnp_1 COG1373 RVT-AbiP2 Hypoth_Ymh Neighborhood of RT #7 [3612013, 3616325] DUF1566 RVT-DGRs MutS_I TMAO_torS Neighborhood of RT #8 [3678671, 3682606] RVT-UG27 Neighborhood of RT #9 [4584138, 4589765] RVT-DGRs Dam Feature: gene Location: 769658-771613 bp Ori: AZS28665.1 Feature: domain Description: Mfa_like_1 Location: 769889-770669 bp Feature: domain Description: Mfa_like_1 Location: 769889-770669 bp Feature: domain Description: YfmG Location: 770684-771605 bp Feature: domain Description: YfmG Location: 770684-771 605 bp Feature: gene Location: 771817-772065 bp Ori: AZS28666.1 Feature: domain Description: YfmG Location: 771931-772057 bp Feature: domain Description: YfmG Location: 771 931 -772057 bp Feature: gene Location: 771954-772952 bp Ori: AZS28667.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 772164-772749 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7721 64-772749 bp Feature: gene Location: 772949-773443 bp Ori: AZS28668.1 Feature: domain Description: HRDC Location: 773180-773375 bp Feature: domain Description: HRDC Location: 7731 80-773375 bp Feature: gene Location: 773612-775444 bp Ori: AZS28669.1 Feature: domain Description: BF2867_like_N Location: 773651-774224 bp Feature: domain Description: BF2867_like_N Location: 773651 -774224 bp Feature: domain Description: YfmG Location: 774239-775436 bp Feature: domain Description: YfmG Location: 774239-775436 bp Feature: gene Location: 1019313-1019960 bp Feature: gene Location: 1019974-1020642 bp Feature: gene Location: 1020635-1021897 bp Ori: AZS28871.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 1020827-1021463 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 1 020827-1 021 463 bp Feature: gene Location: 1022220-1022717 bp Feature: gene Location: 1022767-1023246 bp Feature: gene Location: 1183863-1184810 bp Ori: AZS29008.1 Feature: domain Description: PhoH Location: 1183926-1184805 bp Feature: domain Description: PhoH Location: 1 1 83926-1 1 84805 bp Feature: gene Location: 1184832-1185782 bp Ori: AZS29009.1 Feature: domain Description: PRK12607 Location: 1184838-1185765 bp Feature: domain Description: PRK1 2607 Location: 1 1 84838-1 1 85765 bp Feature: gene Location: 1185877-1187283 bp Ori: AZS29010.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1186219-1186837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 8621 9-1 1 86837 bp Feature: domain Description: GIIM Note: maturase Location: 1186894-1187098 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 86894-1 1 87098 bp Feature: gene Location: 1187780-1189156 bp Ori: AZS29011.1 Gene: dacB Feature: domain Description: Peptidase_S13 Location: 1187879-1189106 bp Feature: domain Description: Peptidase_S1 3 Location: 1 1 87879-1 1 891 06 bp Feature: gene Location: 1189153-1189350 bp Ori: AZS29012.1 Gene: xseB Feature: domain Description: Exonuc_VII_S Location: 1189174-1189324 bp Feature: domain Description: Exonuc_VII_S Location: 1 1 891 74-1 1 89324 bp Feature: gene Location: 2300266-2301567 bp Ori: AZS29876.1 Feature: domain Description: GlpC Location: 2300347-2301553 bp Feature: domain Description: GlpC Location: 2300347-2301 553 bp Feature: gene Location: 2301590-2302753 bp Ori: AZS29877.1 Feature: domain Description: am_tr_V_EF2568 Location: 2301605-2302736 bp Feature: domain Description: am_tr_V_EF2568 Location: 2301 605-2302736 bp Feature: gene Location: 2302879-2304285 bp Ori: AZS29878.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2303221-2303839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2303221 -2303839 bp Feature: domain Description: GIIM Note: maturase Location: 2303896-2304100 bp Feature: domain Description: GIIM Note: maturase Location: 2303896-23041 00 bp Feature: gene Location: 2304962-2306152 bp Ori: AZS29879.1 Gene: kbl Feature: domain Description: 2am3keto_CoA Location: 2304977-2306147 bp Feature: domain Description: 2am3keto_CoA Location: 2304977-23061 47 bp Feature: gene Location: 2306276-2306953 bp Ori: AZS29880.1 Feature: domain Description: MutY Location: 2306297-2306918 bp Feature: domain Description: MutY Location: 2306297-230691 8 bp Feature: gene Location: 2622809-2623141 bp Ori: AZS30111.1 Feature: domain Description: DUF4133 Location: 2622827-2623094 bp Feature: domain Description: DUF41 33 Location: 2622827-2623094 bp Feature: gene Location: 2623138-2625534 bp Ori: AZS30112.1 Gene: traG Feature: domain Description: Bac_Flav_CT_G Location: 2623141-2625523 bp Feature: domain Description: Bac_Flav_CT_G Location: 26231 41 -2625523 bp Feature: gene Location: 2626103-2627926 bp Ori: AZS30113.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2626367-2627189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2626367-26271 89 bp Feature: domain Description: Intron_maturas2 Location: 2627363-2627615 bp Feature: domain Description: Intron_maturas2 Location: 2627363-262761 5 bp Feature: domain Description: HNHc Note: nucleases Location: 2627717-2627888 bp Feature: domain Description: HNHc Note: nucleases Location: 262771 7-2627888 bp Feature: gene Location: 2627930-2628031 bp Feature: gene Location: 2628030-2628146 bp Feature: domain Description: Bac_Flav_CT_G Location: 2628033-2628132 bp Feature: domain Description: Bac_Flav_CT_G Location: 2628033-26281 32 bp Feature: gene Location: 3579641-3580621 bp Ori: AZS30788.1 Feature: domain Description: DDE_Tnp_1 Location: 3580037-3580556 bp Feature: domain Description: DDE_Tnp_1 Location: 3580037-3580556 bp Feature: gene Location: 3580755-3582011 bp Ori: AZS30789.1 Feature: domain Description: COG1373 Location: 3580758-3581991 bp Feature: domain Description: COG1 373 Location: 3580758-3581 991 bp Feature: gene Location: 3582070-3583545 bp Ori: AZS30790.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3582499-3582955 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3582499-3582955 bp Feature: gene Location: 3583829-3584632 bp Ori: AZS30791.1 Feature: domain Description: Hypoth_Ymh Location: 3584255-3584609 bp Feature: domain Description: Hypoth_Ymh Location: 3584255-3584609 bp Feature: gene Location: 3584705-3584971 bp Feature: gene Location: 3612013-3612219 bp Ori: AZS30819.1 Feature: domain Description: DUF1566 Location: 3612055-3612190 bp Feature: domain Description: DUF1 566 Location: 361 2055-361 21 90 bp Feature: gene Location: 3612238-3612462 bp Feature: gene Location: 3612459-3613499 bp Ori: AZS30821.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3612465-3613155 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 361 2465-361 31 55 bp Feature: gene Location: 3613496-3613972 bp Ori: AZS30822.1 Feature: domain Description: MutS_I Location: 3613547-3613742 bp Feature: domain Description: MutS_I Location: 361 3547-361 3742 bp Feature: gene Location: 3614034-3616325 bp Ori: AZS32071.1 Feature: domain Description: TMAO_torS Location: 3614895-3615984 bp Feature: domain Description: TMAO_torS Location: 361 4895-361 5984 bp Feature: gene Location: 3678671-3679150 bp Feature: gene Location: 3679200-3679699 bp Feature: gene Location: 3680022-3681284 bp Ori: AZS30899.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 3680214-3680850 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 368021 4-3680850 bp Feature: gene Location: 3681277-3681945 bp Feature: gene Location: 3681959-3682606 bp Feature: gene Location: 4584138-4585037 bp Feature: gene Location: 4585051-4586486 bp Feature: gene Location: 4586968-4588311 bp Ori: AZS32135.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4587178-4587769 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 45871 78-4587769 bp Feature: gene Location: 4588325-4588735 bp Feature: gene Location: 4588923-4589765 bp Ori: AZS31561.1 Feature: domain Description: Dam Location: 4588926-4589694 bp Feature: domain Description: Dam Location: 4588926-4589694 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mfa_like_1 (pfam13149), YfmG (COG1262), RVT-DGRs, HRDC (smart00341), BF2867_like_N (cd13120), RVT-UG27, PhoH (pfam02562), PRK12607 (phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional), RVT-GII, GIIM (pfam08388)
Peptidase_S13 (pfam02113), Exonuc_VII_S (pfam02609), GlpC (COG0247), am_tr_V_EF2568 (TIGR01977), 2am3keto_CoA (TIGR01822), MutY (COG1194), DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), Intron_maturas2 (pfam01348), HNHc (smart00507)
DDE_Tnp_1 (pfam01609), COG1373 (Predicted ATPase, AAA+ superfamily ), RVT-AbiP2, Hypoth_Ymh (pfam09509), DUF1566 (pfam07603), MutS_I (pfam01624), TMAO_torS (TIGR02956), Dam (pfam05869)