myRT

myRT report for GCA_003994855.1_ASM399485v1

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Seq: CP034142.1 Marinobacter sp. NP-4(2019) chromosome, complete genome (4473318 bp)
Overview 1 RT 1: 1473179-1478232 bp 2 RT 2: 1942538-1946230 bp 3 RT 3: 3486406-3491277 bp Neighborhood of RT #1 [1473179, 1478232] RVT-Retrons Neighborhood of RT #2 [1942538, 1946481] UDG RVT-GII DNA_pol_III_epsilon_like DUF2235 Neighborhood of RT #3 [3486406, 3491279] RVT-UG7 NERD zf-C4_Topoisom urea_trans_UrtE Feature: gene Location: 1473179-1473652 bp Feature: gene Location: 1473748-1474635 bp Feature: gene Location: 1474748-1475902 bp Ori: AZT83282.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1474982-1475624 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 474982-1 475624 bp Feature: gene Location: 1476118-1477347 bp Feature: gene Location: 1477570-1478232 bp Feature: gene Location: 1942538-1943074 bp Ori: AZT85825.1 Feature: domain Description: UDG Location: 1942760-1942958 bp Feature: domain Description: UDG Location: 1 942760-1 942958 bp Feature: gene Location: 1943458-1943982 bp Feature: gene Location: 1944283-1944411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1944289-1944361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 944289-1 944361 bp Feature: gene Location: 1944610-1945413 bp Ori: AZT83651.1 Feature: domain Description: DNA_pol_III_epsilon_like Location: 1944676-1945132 bp Feature: domain Description: DNA_pol_III_epsilon_like Location: 1 944676-1 9451 32 bp Feature: gene Location: 1945456-1946481 bp Ori: AZT83652.1 Feature: domain Description: DUF2235 Location: 1945462-1946230 bp Feature: domain Description: DUF2235 Location: 1 945462-1 946230 bp Feature: gene Location: 3486406-3487278 bp Feature: gene Location: 3487376-3487750 bp Feature: gene Location: 3488000-3489514 bp Ori: AZT84919.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 3488375-3488795 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 3488375-3488795 bp Feature: gene Location: 3489613-3490419 bp Ori: AZT84920.1 Feature: domain Description: NERD Location: 3489712-3490048 bp Feature: domain Description: NERD Location: 348971 2-3490048 bp Feature: domain Description: zf-C4_Topoisom Location: 3490273-3490369 bp Feature: domain Description: zf-C4_Topoisom Location: 3490273-3490369 bp Feature: gene Location: 3490581-3491279 bp Ori: AZT84921.1 Gene: urtE Feature: domain Description: urea_trans_UrtE Location: 3490587-3491277 bp Feature: domain Description: urea_trans_UrtE Location: 3490587-3491 277 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, UDG (smart00986), RVT-GII, DNA_pol_III_epsilon_like (cd06130), DUF2235 (pfam09994), RVT-UG7, NERD (pfam08378), zf-C4_Topoisom (pfam01396), urea_trans_UrtE (TIGR03410)

Seq: CP034143.1 Marinobacter sp. NP-4(2019) plasmid unnamed1, complete sequence (121223 bp)
Overview 1 RT 1: 43366-48118 bp Neighborhood of RT #1 [43366, 48144] PTDH LysR RVT-GII RVT-GII AraC Feature: gene Location: 43366-44375 bp Feature: domain Description: PTDH Location: 43372-44137 bp Feature: domain Description: PTDH Location: 43372 -44137 bp Feature: gene Location: 44369-45229 bp Ori: AZT86004.1 Feature: domain Description: LysR Location: 44378-45221 bp Feature: domain Description: LysR Location: 44378-452 2 1 bp Feature: gene Location: 45144-45713 bp Ori: AZT86005.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45150-45654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45150-45654 bp Feature: gene Location: 45726-45989 bp Ori: AZT86069.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45927-45987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4592 7-45987 bp Feature: gene Location: 46208-46789 bp Feature: gene Location: 47005-48144 bp Ori: AZT86007.1 Feature: domain Description: AraC Location: 47806-48118 bp Feature: domain Description: AraC Location: 47806-48118 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PTDH (cd12157), LysR (COG0583), RVT-GII, AraC (COG2207)