myRT

myRT report for GCA_004001305.1_ASM400130v1

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Seq: AP019372.1 Staphylococcus pseudintermedius SP79 DNA, complete genome (2509706 bp)
Overview 1 RT 1: 164488-170054 bp 2 RT 2: 651936-657360 bp 3 RT 3: 860956-866472 bp 4 RT 4: 991568-995848 bp 5 RT 5: 1443135-1450245 bp 6 RT 6: 1696112-1704614 bp 7 RT 7: 1812130-1817298 bp 8 RT 8: 1901017-1906791 bp 9 RT 9: 2223977-2227488 bp 10 RT 10: 2412995-2419725 bp Neighborhood of RT #1 [164488, 170083] IscR PRK08010 RVT-GII GIIM Acetyltransf_2 Neighborhood of RT #2 [651936, 657360] COG2865 RVT-GII GIIM nicotinamidase_related Neighborhood of RT #3 [860956, 866472] DUF1700 DUF4097 RVT-GII GIIM COG4927 Neighborhood of RT #4 [991568, 995925] CcmA EcsB RVT-GII GIIM HmoA Neighborhood of RT #5 [1443135, 1450262] ABC_sbcCD SbcD RVT-GII GIIM CcdC PRK01844 Neighborhood of RT #6 [1696112, 1704619] CtaA PycA RVT-GII GIIM FtsW YlaN Neighborhood of RT #7 [1812130, 1817312] YSIRK_signal group_II_RT_mat RVT-GII COG3666 DDE_Tnp_1_6 RibD Neighborhood of RT #8 [1901017, 1906799] HAD_Pase PRK13512 RVT-GII GIIM PRK13673 MhpD Neighborhood of RT #9 [2223977, 2227488] COG4584 PRK06526 RVT-GII Neighborhood of RT #10 [2412995, 2419751] AraJ HmoA RVT-GII GIIM PenP MecR1 Transpeptidase Feature: gene Location: 164488-164910 bp Ori: BBH72953.1 Feature: domain Description: IscR Location: 164500-164812 bp Feature: domain Description: IscR Location: 1 64500-1 6481 2 bp Feature: gene Location: 164911-166236 bp Ori: BBH72954.1 Feature: domain Description: PRK08010 Location: 164914-166231 bp Feature: domain Description: PRK0801 0 Location: 1 6491 4-1 66231 bp Feature: gene Location: 166780-168069 bp Ori: BBH72955.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 167005-167614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 67005-1 6761 4 bp Feature: domain Description: GIIM Note: maturase Location: 167674-167905 bp Feature: domain Description: GIIM Note: maturase Location: 1 67674-1 67905 bp Feature: gene Location: 168584-168766 bp Feature: gene Location: 169295-170083 bp Ori: BBH72957.1 Feature: domain Description: Acetyltransf_2 Location: 169361-170054 bp Feature: domain Description: Acetyltransf_2 Location: 1 69361 -1 70054 bp Feature: gene Location: 651936-653372 bp Ori: BBH73385.1 Feature: domain Description: COG2865 Location: 651957-653337 bp Feature: domain Description: COG2865 Location: 651 957-653337 bp Feature: gene Location: 653621-653800 bp Feature: gene Location: 654603-655898 bp Ori: BBH73387.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 654828-655443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 654828-655443 bp Feature: domain Description: GIIM Note: maturase Location: 655503-655734 bp Feature: domain Description: GIIM Note: maturase Location: 655503-655734 bp Feature: gene Location: 656205-656750 bp Ori: BBH73388.1 Gene: ywoC Feature: domain Description: nicotinamidase_related Location: 656223-656685 bp Feature: domain Description: nicotinamidase_related Location: 656223-656685 bp Feature: gene Location: 656911-657360 bp Feature: gene Location: 860956-861519 bp Ori: BBH73572.1 Feature: domain Description: DUF1700 Location: 860962-861499 bp Feature: domain Description: DUF1 700 Location: 860962-861 499 bp Feature: gene Location: 861516-862358 bp Ori: BBH73573.1 Feature: domain Description: DUF4097 Location: 861651-862353 bp Feature: domain Description: DUF4097 Location: 861 651 -862353 bp Feature: gene Location: 862907-864202 bp Ori: BBH73574.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 863132-863747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8631 32-863747 bp Feature: domain Description: GIIM Note: maturase Location: 863807-864038 bp Feature: domain Description: GIIM Note: maturase Location: 863807-864038 bp Feature: gene Location: 864327-865370 bp Ori: BBH73575.1 Feature: domain Description: COG4927 Location: 864330-865362 bp Feature: domain Description: COG4927 Location: 864330-865362 bp Feature: gene Location: 866083-866472 bp Feature: gene Location: 991568-992305 bp Ori: BBH73694.1 Feature: domain Description: CcmA Location: 991574-992246 bp Feature: domain Description: CcmA Location: 991 574-992246 bp Feature: gene Location: 992302-993516 bp Ori: BBH73695.1 Feature: domain Description: EcsB Location: 992320-993451 bp Feature: domain Description: EcsB Location: 992320-993451 bp Feature: gene Location: 994051-994956 bp Ori: BBH73696.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 994276-994888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 994276-994888 bp Feature: gene Location: 994935-995345 bp Ori: BBH73697.1 Feature: domain Description: GIIM Note: maturase Location: 994953-995181 bp Feature: domain Description: GIIM Note: maturase Location: 994953-9951 81 bp Feature: gene Location: 995413-995925 bp Ori: BBH73698.1 Gene: traP Feature: domain Description: HmoA Location: 995629-995848 bp Feature: domain Description: HmoA Location: 995629-995848 bp Feature: gene Location: 1443135-1446167 bp Ori: BBH74131.1 Gene: sbcC Feature: domain Description: ABC_sbcCD Location: 1443138-1446141 bp Feature: domain Description: ABC_sbcCD Location: 1 4431 38-1 4461 41 bp Feature: gene Location: 1446170-1447291 bp Ori: BBH74132.1 Gene: sbcD Feature: domain Description: SbcD Location: 1446176-1447280 bp Feature: domain Description: SbcD Location: 1 4461 76-1 447280 bp Feature: gene Location: 1447477-1448772 bp Ori: BBH74133.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1447702-1448317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 447702-1 44831 7 bp Feature: domain Description: GIIM Note: maturase Location: 1448377-1448608 bp Feature: domain Description: GIIM Note: maturase Location: 1 448377-1 448608 bp Feature: gene Location: 1449320-1449787 bp Ori: BBH74134.1 Feature: domain Description: CcdC Location: 1449326-1449779 bp Feature: domain Description: CcdC Location: 1 449326-1 449779 bp Feature: gene Location: 1450035-1450262 bp Ori: BBH74135.1 Feature: domain Description: PRK01844 Location: 1450038-1450245 bp Feature: domain Description: PRK01 844 Location: 1 450038-1 450245 bp Feature: gene Location: 1696112-1697026 bp Ori: BBH74375.1 Gene: ctaA Feature: domain Description: CtaA Location: 1696124-1697009 bp Feature: domain Description: CtaA Location: 1 6961 24-1 697009 bp Feature: gene Location: 1697164-1700613 bp Ori: BBH74376.1 Feature: domain Description: PycA Location: 1697170-1700602 bp Feature: domain Description: PycA Location: 1 6971 70-1 700602 bp Feature: gene Location: 1701163-1702458 bp Ori: BBH74377.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1701388-1702003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 701 388-1 702003 bp Feature: domain Description: GIIM Note: maturase Location: 1702063-1702294 bp Feature: domain Description: GIIM Note: maturase Location: 1 702063-1 702294 bp Feature: gene Location: 1703041-1704282 bp Ori: BBH74378.1 Feature: domain Description: FtsW Location: 1703080-1704229 bp Feature: domain Description: FtsW Location: 1 703080-1 704229 bp Feature: gene Location: 1704344-1704619 bp Ori: BBH74379.1 Feature: domain Description: YlaN Location: 1704350-1704614 bp Feature: domain Description: YlaN Location: 1 704350-1 70461 4 bp Feature: gene Location: 1812130-1812336 bp Ori: BBH74478.1 Feature: domain Description: YSIRK_signal Location: 1812151-1812268 bp Feature: domain Description: YSIRK_signal Location: 1 81 21 51 -1 81 2268 bp Feature: gene Location: 1812404-1812958 bp Ori: BBH74479.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 1812410-1812755 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 81 241 0-1 81 2755 bp Feature: gene Location: 1813112-1813699 bp Ori: BBH74480.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1813337-1813670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 81 3337-1 81 3670 bp Feature: gene Location: 1814328-1815932 bp Ori: BBH74481.1 Feature: domain Description: COG3666 Location: 1814331-1814805 bp Feature: domain Description: COG3666 Location: 1 81 4331 -1 81 4805 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1815501-1815879 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 1 81 5501 -1 81 5879 bp Feature: gene Location: 1816653-1817312 bp Ori: BBH74482.1 Feature: domain Description: RibD Location: 1816656-1817298 bp Feature: domain Description: RibD Location: 1 81 6656-1 81 7298 bp Feature: gene Location: 1901017-1901841 bp Ori: BBH74555.1 Feature: domain Description: HAD_Pase Location: 1901032-1901806 bp Feature: domain Description: HAD_Pase Location: 1 901 032-1 901 806 bp Feature: gene Location: 1901872-1903197 bp Ori: BBH74556.1 Gene: cdr Feature: domain Description: PRK13512 Location: 1901881-1903189 bp Feature: domain Description: PRK1 351 2 Location: 1 901 881 -1 9031 89 bp Feature: gene Location: 1903276-1904571 bp Ori: BBH74557.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1903501-1904116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 903501 -1 9041 1 6 bp Feature: domain Description: GIIM Note: maturase Location: 1904176-1904407 bp Feature: domain Description: GIIM Note: maturase Location: 1 9041 76-1 904407 bp Feature: gene Location: 1905169-1905558 bp Ori: BBH74558.1 Feature: domain Description: PRK13673 Location: 1905181-1905535 bp Feature: domain Description: PRK1 3673 Location: 1 9051 81 -1 905535 bp Feature: gene Location: 1905894-1906799 bp Ori: BBH74559.1 Feature: domain Description: MhpD Location: 1906044-1906791 bp Feature: domain Description: MhpD Location: 1 906044-1 906791 bp Feature: gene Location: 2223977-2224213 bp Ori: BBH74883.1 Feature: domain Description: COG4584 Location: 2223986-2224166 bp Feature: domain Description: COG4584 Location: 2223986-22241 66 bp Feature: gene Location: 2224336-2224668 bp Ori: BBH74884.1 Feature: domain Description: PRK06526 Location: 2224345-2224624 bp Feature: domain Description: PRK06526 Location: 2224345-2224624 bp Feature: gene Location: 2225293-2226198 bp Ori: BBH74885.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2225518-2226130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222551 8-22261 30 bp Feature: gene Location: 2226475-2226627 bp Feature: gene Location: 2226766-2227488 bp Feature: gene Location: 2412995-2414167 bp Ori: BBH75048.1 Feature: domain Description: AraJ Location: 2413001-2414141 bp Feature: domain Description: AraJ Location: 241 3001 -241 41 41 bp Feature: gene Location: 2414411-2414839 bp Ori: BBH75049.1 Feature: domain Description: HmoA Location: 2414543-2414765 bp Feature: domain Description: HmoA Location: 241 4543-241 4765 bp Feature: gene Location: 2414991-2416286 bp Ori: BBH75050.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2415216-2415831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241 521 6-241 5831 bp Feature: domain Description: GIIM Note: maturase Location: 2415891-2416122 bp Feature: domain Description: GIIM Note: maturase Location: 241 5891 -241 61 22 bp Feature: gene Location: 2417042-2417887 bp Ori: BBH75051.1 Feature: domain Description: PenP Location: 2417054-2417879 bp Feature: domain Description: PenP Location: 241 7054-241 7879 bp Feature: gene Location: 2417994-2419751 bp Ori: BBH75052.1 Feature: domain Description: MecR1 Location: 2417997-2419020 bp Feature: domain Description: MecR1 Location: 241 7997-241 9020 bp Feature: domain Description: Transpeptidase Location: 2419080-2419725 bp Feature: domain Description: Transpeptidase Location: 241 9080-241 9725 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IscR (TIGR02010), PRK08010 (pyridine nucleotide-disulfide oxidoreductase; Provisional), RVT-GII, GIIM (pfam08388), Acetyltransf_2 (pfam00797), COG2865 (Predicted transcriptional regulator, contains HTH domain ), nicotinamidase_related (cd01014), DUF1700 (pfam08006), DUF4097 (pfam13349), COG4927 (Predicted choloylglycine hydrolase )
CcmA (COG4133), EcsB (pfam05975), HmoA (COG2329), ABC_sbcCD (cd03279), SbcD (COG0420), CcdC (COG4846), PRK01844 (YneF family protein), CtaA (COG1612), PycA (COG1038), FtsW (COG0772)
YlaN (COG4838), YSIRK_signal (TIGR01168), group_II_RT_mat (TIGR04416), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RibD (COG1985), HAD_Pase (cd16418), PRK13512 (coenzyme A disulfide reductase; Provisional), PRK13673 (hypothetical protein; Provisional), MhpD (COG3971)
COG4584 (Transposase ), PRK06526 (transposase; Provisional), AraJ (COG2814), PenP (COG2367), MecR1 (COG4219), Transpeptidase (pfam00905)