myRT

myRT report for GCA_004006395.2_ASM400639v2

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Seq: CP029758.2 Clostridium sp. AWRP chromosome, complete genome (4579117 bp)
Overview 1 RT 1: 513289-519731 bp 2 RT 2: 1129356-1134100 bp 3 RT 3: 1405321-1410294 bp 4 RT 4: 1803467-1808547 bp 5 RT 5: 1883599-1889097 bp 6 RT 6: 2048635-2055033 bp 7 RT 7: 3760526-3764679 bp 8 RT 8: 3903667-3910196 bp Neighborhood of RT #1 [513289, 519731] CE4_NodB_like_5s_6s GMP_PMI RVT-GII GIIM COG2865 Neighborhood of RT #2 [1129356, 1134504] RVT_N RVT-GII GIIM HNHc Methyltransf_25 SUA5 Neighborhood of RT #3 [1405321, 1410326] YifB RVT-GII GIIM TIGR00368 Smf Neighborhood of RT #4 [1803467, 1808570] CarboxypepD_reg CarboxypepD_reg CarboxypepD_reg UvrD RVT-GII GIIM SdpI COG3910 Neighborhood of RT #5 [1883599, 1889132] SkfB Branch_AA_trans RVT-GII GIIM Branch_AA_trans Involucrin2 Involucrin2 Involucrin2 Neighborhood of RT #6 [2048635, 2055035] SH3b Tar RVT-GII GIIM COG2108 Tar Neighborhood of RT #7 [3760526, 3764816] Methyltransf_11 HTH_BmrR RVT-GII GIIM SRPBCC_CalC_Aha1-like AAA_18 Neighborhood of RT #8 [3903667, 3910201] KAP_NTPase KAP_NTPase KAP_NTPase RVT-GII GIIM COG5 HxlR Feature: gene Location: 513289-514008 bp Ori: AZV55539.1 Feature: domain Description: CE4_NodB_like_5s_6s Location: 513547-513985 bp Feature: domain Description: CE4_NodB_like_5s_6s Location: 51 3547-51 3985 bp Feature: gene Location: 514504-515883 bp Ori: AZV55540.1 Feature: domain Description: GMP_PMI Location: 514513-515878 bp Feature: domain Description: GMP_PMI Location: 51 451 3-51 5878 bp Feature: gene Location: 516366-517775 bp Ori: AZV55541.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 516717-517335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 671 7-51 7335 bp Feature: domain Description: GIIM Note: maturase Location: 517389-517611 bp Feature: domain Description: GIIM Note: maturase Location: 51 7389-51 761 1 bp Feature: gene Location: 517987-519315 bp Ori: AZV55542.1 Feature: domain Description: COG2865 Location: 517999-519295 bp Feature: domain Description: COG2865 Location: 51 7999-51 9295 bp Feature: gene Location: 519600-519731 bp Feature: gene Location: 1129356-1129568 bp Feature: gene Location: 1129645-1129851 bp Feature: gene Location: 1130511-1132280 bp Ori: AZV56025.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1130559-1130802 bp Feature: domain Description: RVT_N Location: 1 1 30559-1 1 30802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1130859-1131516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 30859-1 1 31 51 6 bp Feature: domain Description: GIIM Note: maturase Location: 1131579-1131813 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 31 579-1 1 31 81 3 bp Feature: domain Description: HNHc Note: nucleases Location: 1132014-1132176 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 3201 4-1 1 321 76 bp Feature: gene Location: 1132504-1133154 bp Ori: AZV56026.1 Feature: domain Description: Methyltransf_25 Location: 1132645-1132924 bp Feature: domain Description: Methyltransf_25 Location: 1 1 32645-1 1 32924 bp Feature: gene Location: 1133455-1134504 bp Ori: AZV56027.1 Feature: domain Description: SUA5 Location: 1133491-1134100 bp Feature: domain Description: SUA5 Location: 1 1 33491 -1 1 341 00 bp Feature: gene Location: 1405321-1405521 bp Feature: gene Location: 1405625-1406368 bp Feature: domain Description: YifB Location: 1405634-1406345 bp Feature: domain Description: YifB Location: 1 405634-1 406345 bp Feature: gene Location: 1406795-1408204 bp Ori: AZV56294.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1407146-1407764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4071 46-1 407764 bp Feature: domain Description: GIIM Note: maturase Location: 1407818-1408040 bp Feature: domain Description: GIIM Note: maturase Location: 1 40781 8-1 408040 bp Feature: gene Location: 1408291-1409055 bp Feature: domain Description: TIGR00368 Location: 1408312-1409053 bp Feature: domain Description: TIGR00368 Location: 1 40831 2-1 409053 bp Feature: gene Location: 1409226-1410326 bp Ori: AZV56295.1 Gene: dprA Feature: domain Description: Smf Location: 1409415-1410294 bp Feature: domain Description: Smf Location: 1 40941 5-1 41 0294 bp Feature: gene Location: 1803467-1804327 bp Ori: AZV56616.1 Feature: domain Description: CarboxypepD_reg Location: 1803587-1803824 bp Feature: domain Description: CarboxypepD_reg Location: 1 803587-1 803824 bp Feature: domain Description: CarboxypepD_reg Location: 1803854-1804079 bp Feature: domain Description: CarboxypepD_reg Location: 1 803854-1 804079 bp Feature: domain Description: CarboxypepD_reg Location: 1804133-1804310 bp Feature: domain Description: CarboxypepD_reg Location: 1 8041 33-1 80431 0 bp Feature: gene Location: 1804622-1805041 bp Feature: domain Description: UvrD Location: 1804628-1804850 bp Feature: domain Description: UvrD Location: 1 804628-1 804850 bp Feature: gene Location: 1805904-1807217 bp Ori: AZV56617.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1806162-1806855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8061 62-1 806855 bp Feature: domain Description: GIIM Note: maturase Location: 1806921-1807131 bp Feature: domain Description: GIIM Note: maturase Location: 1 806921 -1 8071 31 bp Feature: gene Location: 1807344-1807694 bp Ori: AZV56618.1 Feature: domain Description: SdpI Location: 1807428-1807626 bp Feature: domain Description: SdpI Location: 1 807428-1 807626 bp Feature: gene Location: 1807842-1808570 bp Ori: AZV56619.1 Feature: domain Description: COG3910 Location: 1807857-1808547 bp Feature: domain Description: COG391 0 Location: 1 807857-1 808547 bp Feature: gene Location: 1883599-1884981 bp Ori: AZV56687.1 Feature: domain Description: SkfB Location: 1883884-1884769 bp Feature: domain Description: SkfB Location: 1 883884-1 884769 bp Feature: gene Location: 1885104-1886204 bp Gene: brnQ Feature: domain Description: Branch_AA_trans Location: 1885107-1886169 bp Feature: domain Description: Branch_AA_trans Location: 1 8851 07-1 8861 69 bp Feature: gene Location: 1886764-1888077 bp Ori: AZV56688.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1887022-1887715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 887022-1 88771 5 bp Feature: domain Description: GIIM Note: maturase Location: 1887781-1887991 bp Feature: domain Description: GIIM Note: maturase Location: 1 887781 -1 887991 bp Feature: gene Location: 1888165-1888422 bp Feature: domain Description: Branch_AA_trans Location: 1888192-1888423 bp Feature: domain Description: Branch_AA_trans Location: 1 8881 92-1 888423 bp Feature: gene Location: 1888722-1889132 bp Ori: AZV56689.2 Feature: domain Description: Involucrin2 Location: 1888728-1888785 bp Feature: domain Description: Involucrin2 Location: 1 888728-1 888785 bp Feature: domain Description: Involucrin2 Location: 1888794-1888902 bp Feature: domain Description: Involucrin2 Location: 1 888794-1 888902 bp Feature: domain Description: Involucrin2 Location: 1889019-1889097 bp Feature: domain Description: Involucrin2 Location: 1 88901 9-1 889097 bp Feature: gene Location: 2048635-2048706 bp Feature: domain Description: SH3b Location: 2048641-2048707 bp Feature: domain Description: SH3b Location: 2048641 -2048707 bp Feature: gene Location: 2048749-2049384 bp Ori: AZV56829.1 Feature: domain Description: Tar Location: 2048758-2049331 bp Feature: domain Description: Tar Location: 2048758-2049331 bp Feature: gene Location: 2050195-2051604 bp Ori: AZV56830.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2050546-2051164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2050546-2051 1 64 bp Feature: domain Description: GIIM Note: maturase Location: 2051218-2051440 bp Feature: domain Description: GIIM Note: maturase Location: 2051 21 8-2051 440 bp Feature: gene Location: 2051733-2052857 bp Ori: AZV56831.1 Feature: domain Description: COG2108 Location: 2051907-2052837 bp Feature: domain Description: COG21 08 Location: 2051 907-2052837 bp Feature: gene Location: 2053326-2055035 bp Ori: AZV56832.1 Feature: domain Description: Tar Location: 2053656-2055033 bp Feature: domain Description: Tar Location: 2053656-2055033 bp Feature: gene Location: 3760526-3761158 bp Ori: AZV58238.1 Feature: domain Description: Methyltransf_11 Location: 3760634-3760919 bp Feature: domain Description: Methyltransf_1 1 Location: 3760634-376091 9 bp Feature: gene Location: 3761283-3761853 bp Feature: domain Description: HTH_BmrR Location: 3761289-3761448 bp Feature: domain Description: HTH_BmrR Location: 3761 289-3761 448 bp Feature: gene Location: 3761969-3763282 bp Ori: AZV58239.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3762227-3762920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3762227-3762920 bp Feature: domain Description: GIIM Note: maturase Location: 3762986-3763196 bp Feature: domain Description: GIIM Note: maturase Location: 3762986-37631 96 bp Feature: gene Location: 3763895-3764293 bp Ori: AZV58240.1 Feature: domain Description: SRPBCC_CalC_Aha1-like Location: 3763910-3764207 bp Feature: domain Description: SRPBCC_CalC_Aha1 -like Location: 376391 0-3764207 bp Feature: gene Location: 3764310-3764816 bp Ori: AZV59141.1 Feature: domain Description: AAA_18 Location: 3764325-3764679 bp Feature: domain Description: AAA_1 8 Location: 3764325-3764679 bp Feature: gene Location: 3903667-3905046 bp Ori: AZV58365.1 Feature: domain Description: KAP_NTPase Location: 3903688-3903925 bp Feature: domain Description: KAP_NTPase Location: 3903688-3903925 bp Feature: domain Description: KAP_NTPase Location: 3904063-3904201 bp Feature: domain Description: KAP_NTPase Location: 3904063-3904201 bp Feature: domain Description: KAP_NTPase Location: 3904360-3904531 bp Feature: domain Description: KAP_NTPase Location: 3904360-3904531 bp Feature: gene Location: 3905126-3905929 bp Feature: gene Location: 3906098-3907411 bp Ori: AZV58367.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3906356-3907049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3906356-3907049 bp Feature: domain Description: GIIM Note: maturase Location: 3907115-3907325 bp Feature: domain Description: GIIM Note: maturase Location: 39071 1 5-3907325 bp Feature: gene Location: 3908144-3908689 bp Ori: AZV58368.1 Feature: domain Description: COG5 Location: 3908237-3908492 bp Feature: domain Description: COG5 Location: 3908237-3908492 bp Feature: gene Location: 3909875-3910201 bp Ori: AZV58369.1 Feature: domain Description: HxlR Location: 3909887-3910196 bp Feature: domain Description: HxlR Location: 3909887-391 01 96 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CE4_NodB_like_5s_6s (cd10918), GMP_PMI (TIGR01479), RVT-GII, GIIM (pfam08388), COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT_N (pfam13655), HNHc (smart00507), Methyltransf_25 (pfam13649), SUA5 (pfam03481), YifB (COG0606)
TIGR00368 (Mg chelatase-related protein), Smf (COG0758), CarboxypepD_reg (pfam13620), UvrD (COG0210), SdpI (pfam13630), COG3910 (Predicted ATPase ), SkfB (COG0535), Branch_AA_trans (pfam05525), Involucrin2 (pfam06994), SH3b (smart00287)
Tar (COG0840), COG2108 (Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme ), Methyltransf_11 (pfam08241), HTH_BmrR (cd01107), SRPBCC_CalC_Aha1-like (cd07814), AAA_18 (pfam13238), KAP_NTPase (pfam07693), COG5, HxlR (pfam01638)