myRT

myRT report for GCA_004006575.1_ASM400657v1

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Seq: CP034789.1 Escherichia coli strain ECCNB20-2 plasmid pTB422, complete sequence (159108 bp)
Overview 1 RT 1: 35353-38804 bp 2 RT 2: 48800-52286 bp Neighborhood of RT #1 [35353, 38842] InsE RVT-GII Zn_Tnp_IS1 HTH_Tnp_IS1 Rep_3 Neighborhood of RT #2 [48800, 52286] InsE RVT-GII GIIM PHA02517 Feature: gene Location: 35353-35626 bp Ori: AZW07123.1 Feature: domain Description: InsE Location: 35395-35626 bp Feature: domain Description: InsE Location: 35395-35626 bp Feature: gene Location: 35626-36515 bp Feature: gene Location: 36557-37675 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36593-37283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36593-37283 bp Feature: gene Location: 37827-38524 bp Feature: domain Description: Zn_Tnp_IS1 Location: 37833-37935 bp Feature: domain Description: Zn_Tnp_IS1 Location: 37833-37935 bp Feature: domain Description: HTH_Tnp_IS1 Location: 37956-38088 bp Feature: domain Description: HTH_Tnp_IS1 Location: 37956-38088 bp Feature: gene Location: 38534-38842 bp Feature: domain Description: Rep_3 Location: 38540-38804 bp Feature: domain Description: Rep_3 Location: 38540-38804 bp Feature: gene Location: 48800-49485 bp Feature: domain Description: InsE Location: 48812-49076 bp Feature: domain Description: InsE Location: 4881 2-49076 bp Feature: gene Location: 49478-49849 bp Feature: gene Location: 50158-51666 bp Ori: AZW07213.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50416-51148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5041 6-51 1 48 bp Feature: domain Description: GIIM Note: maturase Location: 51223-51421 bp Feature: domain Description: GIIM Note: maturase Location: 51 223-51 421 bp Feature: gene Location: 51747-51926 bp Feature: domain Description: PHA02517 Location: 51750-51927 bp Feature: domain Description: PHA0251 7 Location: 51 750-51 927 bp Feature: gene Location: 52074-52286 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759), Rep_3 (pfam01051), GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: CP034787.1 Escherichia coli strain ECCNB20-2 chromosome, complete genome (4795280 bp)
Overview 1 RT 1: 1872548-1876530 bp Neighborhood of RT #1 [1872548, 1876556] Asparaginase_2 RVT-GII RVT-GII DcuC Feature: gene Location: 1872548-1873579 bp Ori: AZW04159.1 Feature: domain Description: Asparaginase_2 Location: 1872638-1873571 bp Feature: domain Description: Asparaginase_2 Location: 1872 638-1873571 bp Feature: gene Location: 1873737-1873960 bp Feature: gene Location: 1873987-1874151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1873990-1874146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1873990-1874146 bp Feature: gene Location: 1874103-1874549 bp Ori: AZW04160.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1874409-1874511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1874409-1874511 bp Feature: gene Location: 1874915-1875142 bp Feature: gene Location: 1875195-1876556 bp Ori: AZW04161.1 Feature: domain Description: DcuC Location: 1875198-1876530 bp Feature: domain Description: DcuC Location: 1875198-1876530 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), RVT-GII, DcuC (TIGR00771)