myRT

myRT report for GCA_004010895.1_ASM401089v1

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Seq: CP022478.1 Pseudomonas aeruginosa strain LW chromosome, complete genome (6824837 bp)
Overview 1 RT 1: 74528-80876 bp 2 RT 2: 1958335-1967023 bp 3 RT 3: 3723268-3728959 bp Neighborhood of RT #1 [74528, 80884] Phage_AlpA RadC RVT-UG8 RVT-UG3 DUF932 DUF2958 Neighborhood of RT #2 [1958335, 1967067] HyuA Hydantoinase_B RVT-GII GIIM Porin_O_P SLC-NCS1sbd_CobB-like Neighborhood of RT #3 [3723268, 3729105] AlpA HTH_ARSR RVT-UG1 DUF3800 Feature: gene Location: 74528-74890 bp Ori: AZZ10170.1 Feature: domain Description: Phage_AlpA Location: 74651-74801 bp Feature: domain Description: Phage_AlpA Location: 74651 -74801 bp Feature: gene Location: 75168-75317 bp Feature: domain Description: RadC Location: 75171-75306 bp Feature: domain Description: RadC Location: 751 71 -75306 bp Feature: gene Location: 75562-77517 bp Ori: AZZ10171.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 76084-76525 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 76084-76525 bp Feature: gene Location: 77527-78810 bp Ori: AZZ10172.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 77830-78328 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 77830-78328 bp Feature: gene Location: 79420-80244 bp Ori: AZZ10173.1 Feature: domain Description: DUF932 Location: 79531-80209 bp Feature: domain Description: DUF932 Location: 79531 -80209 bp Feature: gene Location: 80516-80884 bp Ori: AZZ10174.1 Feature: domain Description: DUF2958 Location: 80564-80876 bp Feature: domain Description: DUF2958 Location: 80564-80876 bp Feature: gene Location: 1958335-1960425 bp Ori: AZZ11823.1 Feature: domain Description: HyuA Location: 1958350-1960405 bp Feature: domain Description: HyuA Location: 1 958350-1 960405 bp Feature: gene Location: 1960461-1962206 bp Ori: AZZ11824.1 Feature: domain Description: Hydantoinase_B Location: 1960476-1962060 bp Feature: domain Description: Hydantoinase_B Location: 1 960476-1 962060 bp Feature: gene Location: 1962507-1963880 bp Ori: AZZ11825.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1962864-1963479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 962864-1 963479 bp Feature: domain Description: GIIM Note: maturase Location: 1963533-1963761 bp Feature: domain Description: GIIM Note: maturase Location: 1 963533-1 963761 bp Feature: gene Location: 1964380-1965552 bp Ori: AZZ16170.1 Feature: domain Description: Porin_O_P Location: 1964599-1965436 bp Feature: domain Description: Porin_O_P Location: 1 964599-1 965436 bp Feature: gene Location: 1965706-1967067 bp Feature: domain Description: SLC-NCS1sbd_CobB-like Location: 1965763-1967023 bp Feature: domain Description: SLC-NCS1 sbd_CobB-like Location: 1 965763-1 967023 bp Feature: gene Location: 3723268-3723507 bp Ori: AZZ13386.1 Feature: domain Description: AlpA Location: 3723304-3723472 bp Feature: domain Description: AlpA Location: 3723304-3723472 bp Feature: gene Location: 3723560-3724090 bp Ori: AZZ16240.1 Feature: domain Description: HTH_ARSR Location: 3723674-3723800 bp Feature: domain Description: HTH_ARSR Location: 3723674-3723800 bp Feature: gene Location: 3724402-3726747 bp Ori: AZZ13387.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 3725203-3725740 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 3725203-3725740 bp Feature: gene Location: 3727322-3728401 bp Feature: gene Location: 3728398-3729105 bp Ori: AZZ13389.1 Feature: domain Description: DUF3800 Location: 3728416-3728959 bp Feature: domain Description: DUF3800 Location: 372841 6-3728959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_AlpA (pfam05930), RadC (pfam04002), RVT-UG8, RVT-UG3, DUF932 (pfam06067), DUF2958 (pfam11171), HyuA (COG0145), Hydantoinase_B (pfam02538), RVT-GII, GIIM (pfam08388)
Porin_O_P (pfam07396), SLC-NCS1sbd_CobB-like (cd11484), AlpA (COG3311), HTH_ARSR (smart00418), RVT-UG1, DUF3800 (pfam12686)