myRT

myRT report for GCA_004011015.1_ASM401101v1

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Seq: CP025574.1 Escherichia coli strain E-1246 plasmid pE1246_1, complete sequence (129195 bp)
Overview 1 RT 1: 65622-71015 bp Neighborhood of RT #1 [65622, 71020] lnt PRK09413 RVT-GII GIIM PinE Feature: gene Location: 65622-66833 bp Ori: AZZ29876.1 Feature: domain Description: lnt Location: 65925-66651 bp Feature: domain Description: lnt Location: 65925-66651 bp Feature: gene Location: 67683-67889 bp Feature: domain Description: PRK09413 Location: 67731-67890 bp Feature: domain Description: PRK0941 3 Location: 67731 -67890 bp Feature: gene Location: 68401-69753 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68722-69340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68722-69340 bp Feature: domain Description: GIIM Note: maturase Location: 69388-69619 bp Feature: domain Description: GIIM Note: maturase Location: 69388-6961 9 bp Feature: gene Location: 69962-70363 bp Feature: gene Location: 70463-71020 bp Ori: AZZ29878.1 Feature: domain Description: PinE Location: 70466-71015 bp Feature: domain Description: PinE Location: 70466-71 01 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT lnt (TIGR00546), PRK09413 (IS2 repressor TnpA; Reviewed), RVT-GII, GIIM (pfam08388), PinE (COG1961)

Seq: CP025573.1 Escherichia coli strain E-1246 chromosome, complete genome (5425761 bp)
Overview 1 RT 1: 294526-300769 bp 2 RT 2: 1232544-1236183 bp 3 RT 3: 3694687-3698970 bp Neighborhood of RT #1 [294526, 300906] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Neighborhood of RT #2 [1232544, 1236350] InsE RVT-GII GIIM PHA02517 COG2085 Neighborhood of RT #3 [3694687, 3698978] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 294526-294741 bp Ori: AZZ24843.1 Feature: domain Description: Phage_integrase Location: 294541-294637 bp Feature: domain Description: Phage_integrase Location: 2 94541-2 94637 bp Feature: gene Location: 294875-295345 bp Feature: gene Location: 295692-298901 bp Ori: AZZ24845.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 296220-296709 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 962 2 0-2 96709 bp Feature: domain Description: nitrilase Location: 298215-298812 bp Feature: domain Description: nitrilase Location: 2 982 15-2 98812 bp Feature: gene Location: 299196-299999 bp Ori: AZZ24846.1 Feature: domain Description: AbiEi_3_N Location: 299229-299490 bp Feature: domain Description: AbiEi_3_N Location: 2 992 2 9-2 99490 bp Feature: domain Description: AbiEi_3 Location: 299502-299958 bp Feature: domain Description: AbiEi_3 Location: 2 99502 -2 99958 bp Feature: gene Location: 299986-300906 bp Ori: AZZ24847.1 Feature: domain Description: AbiEii Location: 300028-300769 bp Feature: domain Description: AbiEii Location: 30002 8-300769 bp Feature: gene Location: 1232544-1233261 bp Feature: domain Description: InsE Location: 1232583-1232832 bp Feature: domain Description: InsE Location: 12 32 583-12 32 832 bp Feature: gene Location: 1233188-1233625 bp Feature: gene Location: 1233919-1235442 bp Ori: AZZ25660.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1234192-1234924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 34192 -12 3492 4 bp Feature: domain Description: GIIM Note: maturase Location: 1234999-1235197 bp Feature: domain Description: GIIM Note: maturase Location: 12 34999-12 35197 bp Feature: gene Location: 1235523-1236010 bp Feature: domain Description: PHA02517 Location: 1235526-1235697 bp Feature: domain Description: PHA02 517 Location: 12 3552 6-12 35697 bp Feature: gene Location: 1235937-1236350 bp Ori: AZZ25661.1 Feature: domain Description: COG2085 Location: 1236036-1236183 bp Feature: domain Description: COG2 085 Location: 12 36036-12 36183 bp Feature: gene Location: 3694687-3695592 bp Feature: gene Location: 3695566-3695853 bp Feature: gene Location: 3696078-3696469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3696408-3696468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3696408-3696468 bp Feature: gene Location: 3696645-3697166 bp Ori: AZZ28017.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3696651-3696933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3696651-3696933 bp Feature: domain Description: GIIM Note: maturase Location: 3696981-3697161 bp Feature: domain Description: GIIM Note: maturase Location: 3696981-3697161 bp Feature: gene Location: 3697488-3697676 bp Feature: gene Location: 3697749-3698978 bp Ori: AZZ28019.1 Feature: domain Description: YesM Location: 3698229-3698970 bp Feature: domain Description: YesM Location: 36982 2 9-3698970 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843), InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)
COG2085 (Predicted dinucleotide-binding enzyme ), YesM (COG2972)