myRT

myRT report for GCA_004014695.1_ASM401469v1

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Seq: CP034836.1 Hahella sp. KA22 chromosome, complete genome (6937416 bp)
Overview 1 RT 1: 2383054-2387138 bp 2 RT 2: 2824001-2832971 bp 3 RT 3: 6624468-6629002 bp Neighborhood of RT #1 [2383054, 2387143] COG3415 DDE_3 PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #2 [2824001, 2832971] WGR_DNA_ligase HEAT_2 HEAT_2 RVT-Retrons RacX Neighborhood of RT #3 [6624468, 6629076] TerB DUF393 RVT-Retrons PBP2_HisK MFS_NepI_like Feature: gene Location: 2383054-2384088 bp Ori: AZZ91643.1 Feature: domain Description: COG3415 Location: 2383090-2383525 bp Feature: domain Description: COG341 5 Location: 2383090-2383525 bp Feature: domain Description: DDE_3 Location: 2383570-2383993 bp Feature: domain Description: DDE_3 Location: 2383570-2383993 bp Feature: gene Location: 2384123-2384574 bp Feature: domain Description: PHA02517 Location: 2384126-2384357 bp Feature: domain Description: PHA0251 7 Location: 23841 26-2384357 bp Feature: gene Location: 2384640-2385896 bp Ori: AZZ91644.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2384844-2385501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2384844-2385501 bp Feature: domain Description: GIIM Note: maturase Location: 2385582-2385807 bp Feature: domain Description: GIIM Note: maturase Location: 2385582-2385807 bp Feature: gene Location: 2386341-2386823 bp Ori: AZZ91645.1 Feature: domain Description: PHA02517 Location: 2386410-2386758 bp Feature: domain Description: PHA0251 7 Location: 238641 0-2386758 bp Feature: gene Location: 2386823-2387143 bp Ori: AZZ91646.1 Feature: domain Description: InsE Location: 2386829-2387138 bp Feature: domain Description: InsE Location: 2386829-23871 38 bp Feature: gene Location: 2824001-2827132 bp Ori: AZZ92005.1 Feature: domain Description: WGR_DNA_ligase Location: 2824016-2824247 bp Feature: domain Description: WGR_DNA_ligase Location: 282401 6-2824247 bp Feature: domain Description: HEAT_2 Location: 2824331-2824580 bp Feature: domain Description: HEAT_2 Location: 2824331 -2824580 bp Feature: domain Description: HEAT_2 Location: 2826671-2826881 bp Feature: domain Description: HEAT_2 Location: 2826671 -2826881 bp Feature: gene Location: 2827143-2828816 bp Feature: gene Location: 2829270-2831033 bp Ori: AZZ92007.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2829819-2830440 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 282981 9-2830440 bp Feature: gene Location: 2831108-2831800 bp Ori: AZZ92008.1 Feature: domain Description: RacX Location: 2831120-2831792 bp Feature: domain Description: RacX Location: 2831 1 20-2831 792 bp Feature: gene Location: 2831913-2832971 bp Feature: gene Location: 6624468-6624917 bp Ori: AZZ95114.1 Feature: domain Description: TerB Location: 6624486-6624894 bp Feature: domain Description: TerB Location: 6624486-6624894 bp Feature: gene Location: 6624936-6625301 bp Ori: AZZ95115.1 Feature: domain Description: DUF393 Location: 6624960-6625293 bp Feature: domain Description: DUF393 Location: 6624960-6625293 bp Feature: gene Location: 6625324-6626658 bp Ori: AZZ95116.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6625786-6626416 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6625786-662641 6 bp Feature: gene Location: 6626930-6627805 bp Ori: AZZ95117.1 Feature: domain Description: PBP2_HisK Location: 6627122-6627653 bp Feature: domain Description: PBP2_HisK Location: 66271 22-6627653 bp Feature: gene Location: 6627871-6629076 bp Ori: AZZ95118.1 Feature: domain Description: MFS_NepI_like Location: 6627913-6629002 bp Feature: domain Description: MFS_NepI_like Location: 662791 3-6629002 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3415 (Transposase ), DDE_3 (pfam13358), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), WGR_DNA_ligase (cd07998), HEAT_2 (pfam13646), RVT-Retrons, RacX (COG1794)
TerB (pfam05099), DUF393 (pfam04134), PBP2_HisK (cd13704), MFS_NepI_like (cd17324)