myRT

myRT report for GCA_004101785.1_ASM410178v1

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Seq: CP035130.1 Soehngenia sp. W6 chromosome, complete genome (2356157 bp)
Overview 1 RT 1: 236023-240934 bp 2 RT 2: 309413-312194 bp 3 RT 3: 332748-338584 bp 4 RT 4: 735124-740315 bp 5 RT 5: 1087671-1094144 bp 6 RT 6: 1321588-1326371 bp 7 RT 7: 1371178-1375790 bp 8 RT 8: 2314827-2319685 bp Neighborhood of RT #1 [236023, 240948] GATase1_PfpI_like RVT-GII GIIM PRK09034 PRK14874 Neighborhood of RT #2 [309413, 312217] NrdH RVT-GII GIIM prismane_assoc Phage_holin_4_2 Neighborhood of RT #3 [332748, 338646] Flg_new Flg_new Flg_new Flg_new Flg_new Flg_new Flg_new Flg_new Flg_new Flg_new Flg_new RVT-GII Peptidase_S41_CPP Neighborhood of RT #4 [735124, 740389] GalU RVT-GII GIIM DUF2974 ATZ_TRZ_like Neighborhood of RT #5 [1087671, 1094233] PurR RVT-GII GIIM HutH PRK05414 Neighborhood of RT #6 [1321588, 1326436] RocR nrdR RVT-GII GIIM PRK09330 Neighborhood of RT #7 [1371178, 1375795] YqfA NfeD RVT-GII GIIM YqeY Neighborhood of RT #8 [2314827, 2319729] CcdA MATE_NorM_like RVT-GII GIIM Linocin_M18 Feature: gene Location: 236023-236532 bp Feature: domain Description: GATase1_PfpI_like Location: 236032-236512 bp Feature: domain Description: GATase1 _PfpI_like Location: 236032-23651 2 bp Feature: gene Location: 237011-237190 bp Feature: gene Location: 237291-238544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 237495-238110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 237495-2381 1 0 bp Feature: domain Description: GIIM Note: maturase Location: 238167-238395 bp Feature: domain Description: GIIM Note: maturase Location: 2381 67-238395 bp Feature: gene Location: 238636-239943 bp Feature: domain Description: PRK09034 Location: 238639-239938 bp Feature: domain Description: PRK09034 Location: 238639-239938 bp Feature: gene Location: 239965-240948 bp Feature: domain Description: PRK14874 Location: 239974-240934 bp Feature: domain Description: PRK1 4874 Location: 239974-240934 bp Feature: gene Location: 309413-309643 bp Feature: domain Description: NrdH Location: 309422-309635 bp Feature: domain Description: NrdH Location: 309422-309635 bp Feature: gene Location: 309901-310080 bp Feature: gene Location: 310181-311434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 310385-311000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 0385-31 1 000 bp Feature: domain Description: GIIM Note: maturase Location: 311057-311285 bp Feature: domain Description: GIIM Note: maturase Location: 31 1 057-31 1 285 bp Feature: gene Location: 311518-311703 bp Feature: domain Description: prismane_assoc Location: 311527-311698 bp Feature: domain Description: prismane_assoc Location: 31 1 527-31 1 698 bp Feature: gene Location: 311870-312217 bp Feature: domain Description: Phage_holin_4_2 Location: 311894-312194 bp Feature: domain Description: Phage_holin_4_2 Location: 31 1 894-31 21 94 bp Feature: gene Location: 332748-335507 bp Feature: domain Description: Flg_new Location: 333216-333348 bp Feature: domain Description: Flg_new Location: 33321 6-333348 bp Feature: domain Description: Flg_new Location: 333405-333537 bp Feature: domain Description: Flg_new Location: 333405-333537 bp Feature: domain Description: Flg_new Location: 333594-333726 bp Feature: domain Description: Flg_new Location: 333594-333726 bp Feature: domain Description: Flg_new Location: 333783-333915 bp Feature: domain Description: Flg_new Location: 333783-33391 5 bp Feature: domain Description: Flg_new Location: 333972-334104 bp Feature: domain Description: Flg_new Location: 333972-3341 04 bp Feature: domain Description: Flg_new Location: 334161-334293 bp Feature: domain Description: Flg_new Location: 3341 61 -334293 bp Feature: domain Description: Flg_new Location: 334350-334482 bp Feature: domain Description: Flg_new Location: 334350-334482 bp Feature: domain Description: Flg_new Location: 334539-334671 bp Feature: domain Description: Flg_new Location: 334539-334671 bp Feature: domain Description: Flg_new Location: 334728-334860 bp Feature: domain Description: Flg_new Location: 334728-334860 bp Feature: domain Description: Flg_new Location: 334917-335034 bp Feature: domain Description: Flg_new Location: 33491 7-335034 bp Feature: domain Description: Flg_new Location: 335130-335250 bp Feature: domain Description: Flg_new Location: 3351 30-335250 bp Feature: gene Location: 335861-336043 bp Feature: gene Location: 336073-337029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 336277-336892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 336277-336892 bp Feature: gene Location: 337069-337326 bp Feature: gene Location: 337525-338646 bp Feature: domain Description: Peptidase_S41_CPP Location: 337630-338584 bp Feature: domain Description: Peptidase_S41 _CPP Location: 337630-338584 bp Feature: gene Location: 735124-735987 bp Feature: domain Description: GalU Location: 735130-735979 bp Feature: domain Description: GalU Location: 7351 30-735979 bp Feature: gene Location: 736235-736414 bp Feature: gene Location: 736515-737768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 736719-737334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73671 9-737334 bp Feature: domain Description: GIIM Note: maturase Location: 737391-737619 bp Feature: domain Description: GIIM Note: maturase Location: 737391 -73761 9 bp Feature: gene Location: 737911-739077 bp Feature: domain Description: DUF2974 Location: 738169-738832 bp Feature: domain Description: DUF2974 Location: 7381 69-738832 bp Feature: gene Location: 739097-740389 bp Feature: domain Description: ATZ_TRZ_like Location: 739100-740315 bp Feature: domain Description: ATZ_TRZ_like Location: 7391 00-74031 5 bp Feature: gene Location: 1087671-1088684 bp Feature: domain Description: PurR Location: 1087680-1088676 bp Feature: domain Description: PurR Location: 1 087680-1 088676 bp Feature: gene Location: 1089028-1089207 bp Feature: gene Location: 1089308-1090561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1089512-1090127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 08951 2-1 0901 27 bp Feature: domain Description: GIIM Note: maturase Location: 1090184-1090412 bp Feature: domain Description: GIIM Note: maturase Location: 1 0901 84-1 09041 2 bp Feature: gene Location: 1090671-1092200 bp Feature: domain Description: HutH Location: 1090674-1092156 bp Feature: domain Description: HutH Location: 1 090674-1 0921 56 bp Feature: gene Location: 1092212-1094233 bp Feature: domain Description: PRK05414 Location: 1092446-1094144 bp Feature: domain Description: PRK0541 4 Location: 1 092446-1 0941 44 bp Feature: gene Location: 1321588-1322991 bp Feature: domain Description: RocR Location: 1321618-1322986 bp Feature: domain Description: RocR Location: 1 321 61 8-1 322986 bp Feature: gene Location: 1323004-1323369 bp Feature: domain Description: nrdR Location: 1323010-1323358 bp Feature: domain Description: nrdR Location: 1 32301 0-1 323358 bp Feature: gene Location: 1323545-1324798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1323749-1324364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 323749-1 324364 bp Feature: domain Description: GIIM Note: maturase Location: 1324421-1324649 bp Feature: domain Description: GIIM Note: maturase Location: 1 324421 -1 324649 bp Feature: gene Location: 1324899-1325078 bp Feature: gene Location: 1325330-1326436 bp Feature: domain Description: PRK09330 Location: 1325345-1326371 bp Feature: domain Description: PRK09330 Location: 1 325345-1 326371 bp Feature: gene Location: 1371178-1372158 bp Feature: domain Description: YqfA Location: 1371190-1372147 bp Feature: domain Description: YqfA Location: 1 371 1 90-1 3721 47 bp Feature: gene Location: 1372160-1373470 bp Feature: domain Description: NfeD Location: 1372193-1373465 bp Feature: domain Description: NfeD Location: 1 3721 93-1 373465 bp Feature: gene Location: 1373578-1374831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1373782-1374397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 373782-1 374397 bp Feature: domain Description: GIIM Note: maturase Location: 1374454-1374682 bp Feature: domain Description: GIIM Note: maturase Location: 1 374454-1 374682 bp Feature: gene Location: 1374932-1375111 bp Feature: gene Location: 1375352-1375795 bp Feature: domain Description: YqeY Location: 1375364-1375790 bp Feature: domain Description: YqeY Location: 1 375364-1 375790 bp Feature: gene Location: 2314827-2315540 bp Feature: domain Description: CcdA Location: 2314848-2315499 bp Feature: domain Description: CcdA Location: 231 4848-231 5499 bp Feature: gene Location: 2315588-2316988 bp Feature: domain Description: MATE_NorM_like Location: 2315657-2316959 bp Feature: domain Description: MATE_NorM_like Location: 231 5657-231 6959 bp Feature: gene Location: 2317136-2318389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2317340-2317955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231 7340-231 7955 bp Feature: domain Description: GIIM Note: maturase Location: 2318012-2318240 bp Feature: domain Description: GIIM Note: maturase Location: 231 801 2-231 8240 bp Feature: gene Location: 2318490-2318669 bp Feature: gene Location: 2318944-2319729 bp Feature: domain Description: Linocin_M18 Location: 2318950-2319685 bp Feature: domain Description: Linocin_M1 8 Location: 231 8950-231 9685 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GATase1_PfpI_like (cd03134), RVT-GII, GIIM (pfam08388), PRK09034 (aspartate kinase; Reviewed), PRK14874 (aspartate-semialdehyde dehydrogenase; Provisional), NrdH (cd02976), prismane_assoc (TIGR03980), Phage_holin_4_2 (pfam04020), Flg_new (pfam09479), Peptidase_S41_CPP (cd07560)
GalU (COG1210), DUF2974 (pfam11187), ATZ_TRZ_like (cd01298), PurR (COG1609), HutH (COG2986), PRK05414 (urocanate hydratase; Provisional), RocR (COG3829), nrdR (PRK00464), PRK09330 (cell division protein FtsZ; Validated), YqfA (COG4864)
NfeD (pfam01957), YqeY (pfam09424), CcdA (pfam07362), MATE_NorM_like (cd13137), Linocin_M18 (pfam04454)