myRT

myRT report for GCA_004103695.1_ASM410369v1

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Seq: CP035280.1 Clostridium sp. JN-9 chromosome, complete genome (3223191 bp)
Overview 1 RT 1: 140284-149278 bp 2 RT 2: 1977168-1983785 bp 3 RT 3: 2291859-2296914 bp 4 RT 4: 2390511-2394405 bp Neighborhood of RT #1 [140284, 149322] DUF3048 DUF3048_C PRK07111 RVT-GII HNHc PRK07111 PRK07111 RVT-GII PRK07111 Neighborhood of RT #2 [1977168, 1983808] INT_RitB_C_like INT_RitA_C_like RVT-GII GIIM DUF975 M20_Acy1_YhaA-like Neighborhood of RT #3 [2291859, 2296994] INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT-GII GIIM DDE_5 HTH_38 Neighborhood of RT #4 [2390511, 2394405] RVT-DGRs Avd_like Feature: gene Location: 140284-141291 bp Ori: QAT38906.1 Feature: domain Description: DUF3048 Location: 140431-140848 bp Feature: domain Description: DUF3048 Location: 1 40431 -1 40848 bp Feature: domain Description: DUF3048_C Location: 140944-141250 bp Feature: domain Description: DUF3048_C Location: 1 40944-1 41 250 bp Feature: gene Location: 141572-141937 bp Ori: QAT38907.1 Feature: domain Description: PRK07111 Location: 141575-141920 bp Feature: domain Description: PRK071 1 1 Location: 1 41 575-1 41 920 bp Feature: gene Location: 142733-144598 bp Ori: QAT38908.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143060-143780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 43060-1 43780 bp Feature: domain Description: HNHc Note: nucleases Location: 144302-144470 bp Feature: domain Description: HNHc Note: nucleases Location: 1 44302-1 44470 bp Feature: gene Location: 144732-145226 bp Feature: domain Description: PRK07111 Location: 144738-145116 bp Feature: domain Description: PRK071 1 1 Location: 1 44738-1 451 1 6 bp Feature: domain Description: PRK07111 Location: 145134-145227 bp Feature: domain Description: PRK071 1 1 Location: 1 451 34-1 45227 bp Feature: gene Location: 146065-147924 bp Ori: QAT38909.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146323-147070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 46323-1 47070 bp Feature: gene Location: 147945-148031 bp Feature: gene Location: 148030-149322 bp Gene: nrdD Feature: domain Description: PRK07111 Location: 148036-149278 bp Feature: domain Description: PRK071 1 1 Location: 1 48036-1 49278 bp Feature: gene Location: 1977168-1978127 bp Ori: QAT40472.1 Feature: domain Description: INT_RitB_C_like Location: 1977501-1978059 bp Feature: domain Description: INT_RitB_C_like Location: 1 977501 -1 978059 bp Feature: gene Location: 1978124-1979389 bp Ori: QAT40473.1 Feature: domain Description: INT_RitA_C_like Location: 1978823-1979357 bp Feature: domain Description: INT_RitA_C_like Location: 1 978823-1 979357 bp Feature: gene Location: 1979612-1980880 bp Ori: QAT40474.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1979825-1980446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 979825-1 980446 bp Feature: domain Description: GIIM Note: maturase Location: 1980488-1980719 bp Feature: domain Description: GIIM Note: maturase Location: 1 980488-1 98071 9 bp Feature: gene Location: 1981783-1982544 bp Ori: QAT40475.1 Feature: domain Description: DUF975 Location: 1981789-1982233 bp Feature: domain Description: DUF975 Location: 1 981 789-1 982233 bp Feature: gene Location: 1982615-1983808 bp Ori: QAT40476.1 Feature: domain Description: M20_Acy1_YhaA-like Location: 1982639-1983785 bp Feature: domain Description: M20_Acy1 _YhaA-like Location: 1 982639-1 983785 bp Feature: gene Location: 2291859-2292818 bp Ori: QAT40730.1 Feature: domain Description: INT_RitB_C_like Location: 2292192-2292750 bp Feature: domain Description: INT_RitB_C_like Location: 22921 92-2292750 bp Feature: gene Location: 2292776-2293858 bp Ori: QAT40731.1 Feature: domain Description: Phage_int_SAM_1 Location: 2292875-2293112 bp Feature: domain Description: Phage_int_SAM_1 Location: 2292875-22931 1 2 bp Feature: domain Description: INT_RitC_C_like Location: 2293208-2293766 bp Feature: domain Description: INT_RitC_C_like Location: 2293208-2293766 bp Feature: gene Location: 2294018-2295427 bp Ori: QAT40732.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2294369-2294987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2294369-2294987 bp Feature: domain Description: GIIM Note: maturase Location: 2295038-2295257 bp Feature: domain Description: GIIM Note: maturase Location: 2295038-2295257 bp Feature: gene Location: 2295912-2296833 bp Feature: domain Description: DDE_5 Location: 2296047-2296590 bp Feature: domain Description: DDE_5 Location: 2296047-2296590 bp Feature: gene Location: 2296761-2296994 bp Ori: QAT40733.1 Feature: domain Description: HTH_38 Location: 2296785-2296914 bp Feature: domain Description: HTH_38 Location: 2296785-229691 4 bp Feature: gene Location: 2390511-2391422 bp Feature: gene Location: 2391479-2392171 bp Feature: gene Location: 2392211-2393269 bp Ori: QAT40822.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2392415-2393099 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 239241 5-2393099 bp Feature: gene Location: 2393549-2393890 bp Ori: QAT40823.1 Feature: domain Description: Avd_like Location: 2393591-2393879 bp Feature: domain Description: Avd_like Location: 2393591 -2393879 bp Feature: gene Location: 2393980-2394405 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3048 (pfam11258), DUF3048_C (pfam17479), PRK07111 (anaerobic ribonucleoside triphosphate reductase; Provisional), RVT-GII, HNHc (smart00507), INT_RitB_C_like (cd00797), INT_RitA_C_like (cd01188), GIIM (pfam08388), DUF975 (pfam06161), M20_Acy1_YhaA-like (cd08021)
Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), DDE_5 (pfam13546), HTH_38 (pfam13936), RVT-DGRs, Avd_like (cd16376)