myRT

myRT report for GCA_004103715.1_ASM410371v1

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Seq: CP035282.1 Sporanaerobacter sp. NJN-17 chromosome, complete genome (3743723 bp)
Overview 1 RT 1: 214756-219684 bp 2 RT 2: 2038788-2043880 bp 3 RT 3: 3382613-3387152 bp 4 RT 4: 3426698-3431712 bp 5 RT 5: 3712333-3718335 bp Neighborhood of RT #1 [214756, 219692] VirD4 RVT-GII GIIM SSB_OBF Maff2 Neighborhood of RT #2 [2038788, 2043924] cas_Csh2 Cas8a1_I-A RVT-UNC Cas_DxTHG PRK06526 Neighborhood of RT #3 [3382613, 3387152] HTH_28 HTH_28 HTH_28 PHA02517 RVT-GII GIIM BAR_Endophilin_B1 Neighborhood of RT #4 [3426698, 3431726] PBP2_OppA PBP2_OppA RVT-GII ABC2_membrane_5 ABC2_membrane_5 Neighborhood of RT #5 [3712333, 3718472] DDE_Tnp_1 PHA02517 RVT_N RVT-GII GIIM HTH_Tnp_1 PHA02517 DDE_Tnp_IS240 Feature: gene Location: 214756-215292 bp Feature: gene Location: 215320-217107 bp Ori: QAT60270.1 Feature: domain Description: VirD4 Location: 215581-217003 bp Feature: domain Description: VirD4 Location: 21 5581 -21 7003 bp Feature: gene Location: 217621-219036 bp Ori: QAT60271.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217975-218590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 7975-21 8590 bp Feature: domain Description: GIIM Note: maturase Location: 218644-218875 bp Feature: domain Description: GIIM Note: maturase Location: 21 8644-21 8875 bp Feature: gene Location: 219155-219475 bp Ori: QAT60272.1 Feature: domain Description: SSB_OBF Location: 219245-219410 bp Feature: domain Description: SSB_OBF Location: 21 9245-21 941 0 bp Feature: gene Location: 219477-219692 bp Ori: QAT60273.1 Feature: domain Description: Maff2 Location: 219480-219684 bp Feature: domain Description: Maff2 Location: 21 9480-21 9684 bp Feature: gene Location: 2038788-2039678 bp Ori: QAT61867.1 Gene: cas7b Feature: domain Description: cas_Csh2 Location: 2038803-2039613 bp Feature: domain Description: cas_Csh2 Location: 2038803-203961 3 bp Feature: gene Location: 2039671-2041611 bp Ori: QAT61868.1 Feature: domain Description: Cas8a1_I-A Location: 2039674-2041573 bp Feature: domain Description: Cas8a1 _I-A Location: 2039674-2041 573 bp Feature: gene Location: 2041643-2042401 bp Ori: QAT61869.1 Gene: cas6 Feature: RT Description: RVT-UNC Note: UNC RT Location: 2041688-2042033 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2041 688-2042033 bp Feature: gene Location: 2042637-2043068 bp Ori: QAT61870.1 Feature: domain Description: Cas_DxTHG Location: 2042646-2042979 bp Feature: domain Description: Cas_DxTHG Location: 2042646-2042979 bp Feature: gene Location: 2043160-2043924 bp Ori: QAT61871.1 Feature: domain Description: PRK06526 Location: 2043247-2043880 bp Feature: domain Description: PRK06526 Location: 2043247-2043880 bp Feature: gene Location: 3382613-3383293 bp Ori: QAT63027.1 Feature: domain Description: HTH_28 Location: 3382646-3382781 bp Feature: domain Description: HTH_28 Location: 3382646-3382781 bp Feature: domain Description: HTH_28 Location: 3382829-3382958 bp Feature: domain Description: HTH_28 Location: 3382829-3382958 bp Feature: domain Description: HTH_28 Location: 3383006-3383159 bp Feature: domain Description: HTH_28 Location: 3383006-33831 59 bp Feature: gene Location: 3383263-3384177 bp Ori: QAT63028.1 Feature: domain Description: PHA02517 Location: 3383425-3384157 bp Feature: domain Description: PHA0251 7 Location: 3383425-33841 57 bp Feature: gene Location: 3384391-3385674 bp Ori: QAT63029.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3384595-3385210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3384595-338521 0 bp Feature: domain Description: GIIM Note: maturase Location: 3385270-3385501 bp Feature: domain Description: GIIM Note: maturase Location: 3385270-3385501 bp Feature: gene Location: 3386289-3386816 bp Ori: QAT63030.1 Feature: domain Description: BAR_Endophilin_B1 Location: 3386412-3386685 bp Feature: domain Description: BAR_Endophilin_B1 Location: 338641 2-3386685 bp Feature: gene Location: 3386844-3387152 bp Feature: gene Location: 3426698-3427123 bp Ori: QAT63066.1 Feature: domain Description: PBP2_OppA Location: 3426701-3427112 bp Feature: domain Description: PBP2_OppA Location: 3426701 -34271 1 2 bp Feature: gene Location: 3427108-3428481 bp Ori: QAT63067.1 Feature: domain Description: PBP2_OppA Location: 3427366-3428461 bp Feature: domain Description: PBP2_OppA Location: 3427366-3428461 bp Feature: gene Location: 3428933-3429688 bp Ori: QAT63068.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3429137-3429494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34291 37-3429494 bp Feature: gene Location: 3430429-3431088 bp Ori: QAT63069.1 Feature: domain Description: ABC2_membrane_5 Location: 3430438-3431071 bp Feature: domain Description: ABC2_membrane_5 Location: 3430438-3431 071 bp Feature: gene Location: 3431100-3431726 bp Ori: QAT63070.1 Feature: domain Description: ABC2_membrane_5 Location: 3431109-3431712 bp Feature: domain Description: ABC2_membrane_5 Location: 3431 1 09-3431 71 2 bp Feature: gene Location: 3712333-3713400 bp Ori: QAT63303.1 Feature: domain Description: DDE_Tnp_1 Location: 3712651-3713347 bp Feature: domain Description: DDE_Tnp_1 Location: 371 2651 -371 3347 bp Feature: gene Location: 3713552-3713878 bp Ori: QAT63304.1 Feature: domain Description: PHA02517 Location: 3713621-3713867 bp Feature: domain Description: PHA0251 7 Location: 371 3621 -371 3867 bp Feature: gene Location: 3713904-3715382 bp Ori: QAT63305.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3713976-3714219 bp Feature: domain Description: RVT_N Location: 371 3976-371 421 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3714264-3714921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371 4264-371 4921 bp Feature: domain Description: GIIM Note: maturase Location: 3714972-3715209 bp Feature: domain Description: GIIM Note: maturase Location: 371 4972-371 5209 bp Feature: gene Location: 3715975-3716850 bp Ori: QAT63306.1 Feature: domain Description: HTH_Tnp_1 Location: 3715990-3716173 bp Feature: domain Description: HTH_Tnp_1 Location: 371 5990-371 61 73 bp Feature: domain Description: PHA02517 Location: 3716398-3716839 bp Feature: domain Description: PHA0251 7 Location: 371 6398-371 6839 bp Feature: gene Location: 3717030-3718472 bp Ori: QAT63307.1 Feature: domain Description: DDE_Tnp_IS240 Location: 3717885-3718335 bp Feature: domain Description: DDE_Tnp_IS240 Location: 371 7885-371 8335 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), RVT-GII, GIIM (pfam08388), SSB_OBF (cd04496), Maff2 (pfam12750), cas_Csh2 (TIGR02590), Cas8a1_I-A (cl21533), RVT-UG5/RVT-CRISPR/RVT-CRISPR-like(RVT-UNC), Cas_DxTHG (pfam09455), PRK06526 (transposase; Provisional)
HTH_28 (pfam13518), PHA02517 (putative transposase OrfB; Reviewed), BAR_Endophilin_B1 (cd07616), PBP2_OppA (cd08504), ABC2_membrane_5 (pfam13346), DDE_Tnp_1 (pfam01609), RVT_N (pfam13655), HTH_Tnp_1 (pfam01527), DDE_Tnp_IS240 (pfam13610)