myRT

myRT report for GCA_004114715.1_ASM411471v1

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Seq: CP035305.1 Bacillus coagulans strain IDCC1201 chromosome, complete genome (3664215 bp)
Overview 1 RT 1: 316901-322481 bp 2 RT 2: 357756-364164 bp 3 RT 3: 470168-476145 bp 4 RT 4: 811973-820375 bp 5 RT 5: 879557-884560 bp 6 RT 6: 1027348-1032609 bp 7 RT 7: 1130591-1136600 bp 8 RT 8: 1386265-1391618 bp 9 RT 9: 2269695-2274984 bp 10 RT 10: 2437793-2445201 bp 11 RT 11: 3089476-3096063 bp 12 RT 12: 3451191-3455614 bp Neighborhood of RT #1 [316901, 322504] PRK03584 RVT-GII GIIM ChrA ChrA Neighborhood of RT #2 [357756, 364229] PRK11360 prfC RVT-GII GIIM R_switched_YkoY Neighborhood of RT #3 [470168, 476165] rluA_subfam PyrR RVT-GII GIIM pyrB pyrC Neighborhood of RT #4 [811973, 820533] parE_Gpos parC_Gpos GyrA-ParC_C RVT-GII GIIM MFS_1 Neighborhood of RT #5 [879557, 884565] RTP RVT-GII GIIM PucG AllC Neighborhood of RT #6 [1027348, 1032623] DnaD RVT-GII GIIM asnC PRK05764 Neighborhood of RT #7 [1130591, 1136605] Disulph_isomer FruK RVT-GII AceF AcoB Neighborhood of RT #8 [1386265, 1391618] tig TPR RVT-GII GIIM DUF2512 Neighborhood of RT #9 [2269695, 2275043] DEDD_Tnp_IS110 COG3547 YbbC RVT-GII GIIM Prok-TraM Neighborhood of RT #10 [2437793, 2445332] PTS-II-ABC-beta BglG RVT-GII GIIM AzgA GAS Neighborhood of RT #11 [3089476, 3096128] HMG-CoA_reductase_classII RVT-GII GIIM HMG-CoA-S_prok UPF0236 Neighborhood of RT #12 [3451191, 3455628] yflN-like_MBL-fold RVT-GII GIIM PnbA Feature: gene Location: 316901-317110 bp Feature: gene Location: 317408-319399 bp Ori: QAU25861.1 Feature: domain Description: PRK03584 Location: 317432-319370 bp Feature: domain Description: PRK03584 Location: 31 7432-31 9370 bp Feature: gene Location: 319844-321268 bp Ori: QAU25862.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 320192-320807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3201 92-320807 bp Feature: domain Description: GIIM Note: maturase Location: 320861-321083 bp Feature: domain Description: GIIM Note: maturase Location: 320861 -321 083 bp Feature: gene Location: 321369-321908 bp Ori: QAU25863.1 Feature: domain Description: ChrA Location: 321375-321891 bp Feature: domain Description: ChrA Location: 321 375-321 891 bp Feature: gene Location: 321905-322504 bp Ori: QAU25864.1 Feature: domain Description: ChrA Location: 321920-322481 bp Feature: domain Description: ChrA Location: 321 920-322481 bp Feature: gene Location: 357756-358832 bp Ori: QAU25887.1 Feature: domain Description: PRK11360 Location: 357828-358794 bp Feature: domain Description: PRK1 1 360 Location: 357828-358794 bp Feature: gene Location: 359049-360617 bp Ori: QAU25888.1 Feature: domain Description: prfC Location: 359064-360606 bp Feature: domain Description: prfC Location: 359064-360606 bp Feature: gene Location: 361059-362468 bp Ori: QAU25889.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361407-362022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361 407-362022 bp Feature: domain Description: GIIM Note: maturase Location: 362076-362295 bp Feature: domain Description: GIIM Note: maturase Location: 362076-362295 bp Feature: gene Location: 362631-363101 bp Feature: gene Location: 363426-364229 bp Ori: QAU25891.1 Feature: domain Description: R_switched_YkoY Location: 363477-364164 bp Feature: domain Description: R_switched_YkoY Location: 363477-3641 64 bp Feature: gene Location: 470168-471079 bp Ori: QAU25998.1 Feature: domain Description: rluA_subfam Location: 470201-471068 bp Feature: domain Description: rluA_subfam Location: 470201 -471 068 bp Feature: gene Location: 471250-471792 bp Ori: QAU25999.1 Gene: pyrR Feature: domain Description: PyrR Location: 471259-471784 bp Feature: domain Description: PyrR Location: 471 259-471 784 bp Feature: gene Location: 472276-473685 bp Ori: QAU26000.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 472624-473239 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 472624-473239 bp Feature: domain Description: GIIM Note: maturase Location: 473293-473512 bp Feature: domain Description: GIIM Note: maturase Location: 473293-47351 2 bp Feature: gene Location: 473920-474819 bp Ori: QAU26001.1 Feature: domain Description: pyrB Location: 473923-474796 bp Feature: domain Description: pyrB Location: 473923-474796 bp Feature: gene Location: 474879-476165 bp Ori: QAU26002.1 Feature: domain Description: pyrC Location: 474888-476145 bp Feature: domain Description: pyrC Location: 474888-4761 45 bp Feature: gene Location: 811973-813952 bp Ori: QAU26306.1 Gene: parE Feature: domain Description: parE_Gpos Location: 812000-813905 bp Feature: domain Description: parE_Gpos Location: 81 2000-81 3905 bp Feature: gene Location: 813949-816396 bp Ori: QAU26307.1 Gene: parC Feature: domain Description: parC_Gpos Location: 813973-816187 bp Feature: domain Description: parC_Gpos Location: 81 3973-81 61 87 bp Feature: domain Description: GyrA-ParC_C Location: 816190-816355 bp Feature: domain Description: GyrA-ParC_C Location: 81 61 90-81 6355 bp Feature: gene Location: 816837-818246 bp Ori: QAU26308.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 817185-817800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 71 85-81 7800 bp Feature: domain Description: GIIM Note: maturase Location: 817854-818073 bp Feature: domain Description: GIIM Note: maturase Location: 81 7854-81 8073 bp Feature: gene Location: 818357-819166 bp Feature: gene Location: 819280-820533 bp Ori: QAU26310.1 Feature: domain Description: MFS_1 Location: 819331-820375 bp Feature: domain Description: MFS_1 Location: 81 9331 -820375 bp Feature: gene Location: 879557-879934 bp Ori: QAU26358.1 Feature: domain Description: RTP Location: 879590-879929 bp Feature: domain Description: RTP Location: 879590-879929 bp Feature: gene Location: 880037-880222 bp Feature: gene Location: 880374-881783 bp Ori: QAU26360.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 880722-881337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 880722-881 337 bp Feature: domain Description: GIIM Note: maturase Location: 881391-881610 bp Feature: domain Description: GIIM Note: maturase Location: 881 391 -881 61 0 bp Feature: gene Location: 882046-883305 bp Ori: QAU26361.1 Feature: domain Description: PucG Location: 882079-883273 bp Feature: domain Description: PucG Location: 882079-883273 bp Feature: gene Location: 883327-884565 bp Ori: QAU26362.1 Gene: allC Feature: domain Description: AllC Location: 883363-884560 bp Feature: domain Description: AllC Location: 883363-884560 bp Feature: gene Location: 1027348-1028043 bp Ori: QAU26508.1 Feature: domain Description: DnaD Location: 1027357-1028041 bp Feature: domain Description: DnaD Location: 1 027357-1 028041 bp Feature: gene Location: 1028216-1028401 bp Feature: gene Location: 1028553-1029962 bp Ori: QAU26510.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1028901-1029516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 028901 -1 02951 6 bp Feature: domain Description: GIIM Note: maturase Location: 1029570-1029789 bp Feature: domain Description: GIIM Note: maturase Location: 1 029570-1 029789 bp Feature: gene Location: 1030048-1031340 bp Ori: QAU26511.1 Feature: domain Description: asnC Location: 1030063-1031335 bp Feature: domain Description: asnC Location: 1 030063-1 031 335 bp Feature: gene Location: 1031436-1032623 bp Ori: QAU26512.1 Feature: domain Description: PRK05764 Location: 1031439-1032609 bp Feature: domain Description: PRK05764 Location: 1 031 439-1 032609 bp Feature: gene Location: 1130591-1131028 bp Ori: QAU26620.1 Feature: domain Description: Disulph_isomer Location: 1130615-1131017 bp Feature: domain Description: Disulph_isomer Location: 1 1 3061 5-1 1 31 01 7 bp Feature: gene Location: 1131295-1132206 bp Ori: QAU26621.1 Gene: pfkB Feature: domain Description: FruK Location: 1131298-1132201 bp Feature: domain Description: FruK Location: 1 1 31 298-1 1 32201 bp Feature: gene Location: 1132825-1134235 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1133173-1133659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 331 73-1 1 33659 bp Feature: gene Location: 1134320-1135597 bp Ori: QAU26622.1 Feature: domain Description: AceF Location: 1134329-1135568 bp Feature: domain Description: AceF Location: 1 1 34329-1 1 35568 bp Feature: gene Location: 1135622-1136605 bp Ori: QAU26623.1 Feature: domain Description: AcoB Location: 1135634-1136600 bp Feature: domain Description: AcoB Location: 1 1 35634-1 1 36600 bp Feature: gene Location: 1386265-1387551 bp Ori: QAU26864.1 Feature: domain Description: tig Location: 1386268-1387543 bp Feature: domain Description: tig Location: 1 386268-1 387543 bp Feature: gene Location: 1387715-1388707 bp Ori: QAU26865.1 Feature: domain Description: TPR Location: 1387769-1388048 bp Feature: domain Description: TPR Location: 1 387769-1 388048 bp Feature: gene Location: 1388882-1390291 bp Ori: QAU26866.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1389230-1389845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 389230-1 389845 bp Feature: domain Description: GIIM Note: maturase Location: 1389899-1390118 bp Feature: domain Description: GIIM Note: maturase Location: 1 389899-1 3901 1 8 bp Feature: gene Location: 1390744-1391187 bp Ori: QAU26867.1 Feature: domain Description: DUF2512 Location: 1390747-1391152 bp Feature: domain Description: DUF251 2 Location: 1 390747-1 391 1 52 bp Feature: gene Location: 1391322-1391618 bp Feature: gene Location: 2269695-2270918 bp Ori: QAU27568.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 2269710-2270181 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 226971 0-22701 81 bp Feature: domain Description: COG3547 Location: 2270415-2270868 bp Feature: domain Description: COG3547 Location: 227041 5-2270868 bp Feature: gene Location: 2271330-2272598 bp Ori: QAU27569.1 Feature: domain Description: YbbC Location: 2271351-2272587 bp Feature: domain Description: YbbC Location: 2271 351 -2272587 bp Feature: gene Location: 2272674-2274083 bp Ori: QAU27570.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2273022-2273637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2273022-2273637 bp Feature: domain Description: GIIM Note: maturase Location: 2273691-2273910 bp Feature: domain Description: GIIM Note: maturase Location: 2273691 -227391 0 bp Feature: gene Location: 2274235-2274420 bp Feature: gene Location: 2274645-2275043 bp Ori: QAU27572.1 Feature: domain Description: Prok-TraM Location: 2274768-2274984 bp Feature: domain Description: Prok-TraM Location: 2274768-2274984 bp Feature: gene Location: 2437793-2439775 bp Ori: QAU27699.1 Feature: domain Description: PTS-II-ABC-beta Location: 2437811-2439740 bp Feature: domain Description: PTS-II-ABC-beta Location: 243781 1 -2439740 bp Feature: gene Location: 2440192-2441037 bp Ori: QAU27700.1 Feature: domain Description: BglG Location: 2440201-2441032 bp Feature: domain Description: BglG Location: 2440201 -2441 032 bp Feature: gene Location: 2441196-2442605 bp Ori: QAU27701.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2441544-2442159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2441 544-24421 59 bp Feature: domain Description: GIIM Note: maturase Location: 2442213-2442432 bp Feature: domain Description: GIIM Note: maturase Location: 244221 3-2442432 bp Feature: gene Location: 2443050-2444378 bp Ori: QAU27702.1 Feature: domain Description: AzgA Location: 2443053-2444373 bp Feature: domain Description: AzgA Location: 2443053-2444373 bp Feature: gene Location: 2444871-2445332 bp Ori: QAU27703.1 Feature: domain Description: GAS Location: 2444898-2445201 bp Feature: domain Description: GAS Location: 2444898-2445201 bp Feature: gene Location: 3089476-3089745 bp Feature: gene Location: 3089908-3091197 bp Ori: QAU28243.1 Feature: domain Description: HMG-CoA_reductase_classII Location: 3089929-3091192 bp Feature: domain Description: HMG-CoA_reductase_classII Location: 3089929-3091 1 92 bp Feature: gene Location: 3091908-3093317 bp Ori: QAU28244.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3092256-3092871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3092256-3092871 bp Feature: domain Description: GIIM Note: maturase Location: 3092925-3093141 bp Feature: domain Description: GIIM Note: maturase Location: 3092925-30931 41 bp Feature: gene Location: 3093385-3094569 bp Ori: QAU28245.1 Feature: domain Description: HMG-CoA-S_prok Location: 3093394-3094540 bp Feature: domain Description: HMG-CoA-S_prok Location: 3093394-3094540 bp Feature: gene Location: 3094713-3096128 bp Ori: QAU28246.1 Feature: domain Description: UPF0236 Location: 3094725-3096063 bp Feature: domain Description: UPF0236 Location: 3094725-3096063 bp Feature: gene Location: 3451191-3451907 bp Ori: QAU28508.1 Feature: domain Description: yflN-like_MBL-fold Location: 3451215-3451857 bp Feature: domain Description: yflN-like_MBL-fold Location: 3451 21 5-3451 857 bp Feature: gene Location: 3452011-3452196 bp Feature: gene Location: 3452348-3453757 bp Ori: QAU28510.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3452696-3453311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3452696-345331 1 bp Feature: domain Description: GIIM Note: maturase Location: 3453365-3453584 bp Feature: domain Description: GIIM Note: maturase Location: 3453365-3453584 bp Feature: gene Location: 3453825-3454064 bp Feature: gene Location: 3454150-3455628 bp Ori: QAU28511.1 Feature: domain Description: PnbA Location: 3454162-3455614 bp Feature: domain Description: PnbA Location: 34541 62-345561 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK03584 (acetoacetate--CoA ligase), RVT-GII, GIIM (pfam08388), ChrA (COG2059), PRK11360 (two-component system sensor histidine kinase AtoS), prfC (TIGR00503), R_switched_YkoY (TIGR03716), rluA_subfam (TIGR00005), PyrR (COG2065), pyrB (PRK13814)
pyrC (PRK09357), parE_Gpos (TIGR01058), parC_Gpos (TIGR01061), GyrA-ParC_C (sd00041), MFS_1 (pfam07690), RTP (pfam02334), PucG (COG0075), AllC (TIGR03176), DnaD (COG3935), asnC (PRK03932)
PRK05764 (aspartate aminotransferase; Provisional), Disulph_isomer (pfam06491), FruK (COG1105), AceF (COG0508), AcoB (COG0022), tig (TIGR00115), TPR (smart00028), DUF2512 (pfam10710), DEDD_Tnp_IS110 (pfam01548), COG3547 (Transposase )
YbbC (COG3876), Prok-TraM (pfam09228), PTS-II-ABC-beta (TIGR01995), BglG (COG3711), AzgA (COG2252), GAS (pfam13851), HMG-CoA_reductase_classII (cd00644), HMG-CoA-S_prok (TIGR01835), UPF0236 (pfam06782), yflN-like_MBL-fold (cd07721)
PnbA (COG2272)