myRT

myRT report for GCA_004114955.1_ASM411495v1

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Seq: CP030053.1 Bradyrhizobium sp. CCBAU 51670 chromosome, complete genome (7158886 bp)
Overview 1 RT 1: 2356283-2360914 bp Neighborhood of RT #1 [2356283, 2360914] Transposase_mut RVT-GII Feature: gene Location: 2356283-2356915 bp Feature: gene Location: 2357293-2358492 bp Feature: domain Description: Transposase_mut Location: 2357305-2358406 bp Feature: domain Description: Transposase_mut Location: 2357305-2358406 bp Feature: gene Location: 2358950-2360344 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2359631-2359979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2359631 -2359979 bp Feature: gene Location: 2360323-2360574 bp Feature: gene Location: 2360666-2360914 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_mut (pfam00872), RVT-GII

Seq: CP030054.1 Bradyrhizobium sp. CCBAU 51670 plasmid unnamed1, complete sequence (979291 bp)
Overview 1 RT 1: 129213-135034 bp 2 RT 2: 149227-156776 bp 3 RT 3: 232184-235402 bp Neighborhood of RT #1 [129213, 135034] TadD RVT-GII Ser_Recombinase Neighborhood of RT #2 [149227, 156928] Tm-1-like DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM COG3436 TnpB_IS66 RVT-GII GIIM TnpB_IS66 InsE Neighborhood of RT #3 [232184, 235521] COG3335 RVT-GII COG3415 Feature: gene Location: 129213-129755 bp Feature: domain Description: TadD Location: 129588-129747 bp Feature: domain Description: TadD Location: 12 9588-12 9747 bp Feature: gene Location: 130515-131138 bp Feature: gene Location: 131759-132581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131762-132017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131762 -132 017 bp Feature: gene Location: 133075-134315 bp Feature: domain Description: Ser_Recombinase Location: 133129-133543 bp Feature: domain Description: Ser_Recombinase Location: 13312 9-133543 bp Feature: gene Location: 134402-135034 bp Feature: gene Location: 149227-150402 bp Ori: QAU50603.1 Feature: domain Description: Tm-1-like Location: 149230-150364 bp Feature: domain Description: Tm-1-like Location: 1492 30-150364 bp Feature: gene Location: 150699-151556 bp Feature: domain Description: DDE_Tnp_IS66 Location: 150705-151371 bp Feature: domain Description: DDE_Tnp_IS66 Location: 150705-151371 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 151392-151503 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 151392 -151503 bp Feature: gene Location: 151636-152889 bp Ori: QAU50604.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151843-152497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151843-152 497 bp Feature: domain Description: GIIM Note: maturase Location: 152584-152794 bp Feature: domain Description: GIIM Note: maturase Location: 152 584-152 794 bp Feature: gene Location: 153438-154250 bp Feature: domain Description: COG3436 Location: 153774-154239 bp Feature: domain Description: COG3436 Location: 153774-1542 39 bp Feature: gene Location: 154296-154490 bp Ori: QAU50605.1 Feature: domain Description: TnpB_IS66 Location: 154320-154461 bp Feature: domain Description: TnpB_IS66 Location: 15432 0-154461 bp Feature: gene Location: 154524-155750 bp Ori: QAU51203.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154686-155343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154686-155343 bp Feature: domain Description: GIIM Note: maturase Location: 155424-155640 bp Feature: domain Description: GIIM Note: maturase Location: 15542 4-155640 bp Feature: gene Location: 156312-156530 bp Ori: QAU50606.1 Feature: domain Description: TnpB_IS66 Location: 156339-156489 bp Feature: domain Description: TnpB_IS66 Location: 156339-156489 bp Feature: gene Location: 156527-156928 bp Ori: QAU50607.1 Feature: domain Description: InsE Location: 156560-156776 bp Feature: domain Description: InsE Location: 156560-156776 bp Feature: gene Location: 232184-233250 bp Feature: gene Location: 233351-233725 bp Feature: domain Description: COG3335 Location: 233366-233708 bp Feature: domain Description: COG3335 Location: 2 33366-2 33708 bp Feature: gene Location: 233722-234530 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 233938-234184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 33938-2 34184 bp Feature: gene Location: 234617-234980 bp Feature: gene Location: 235057-235521 bp Feature: domain Description: COG3415 Location: 235063-235402 bp Feature: domain Description: COG3415 Location: 2 35063-2 35402 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TadD (COG5010), RVT-GII, Ser_Recombinase (cl02788), Tm-1-like (cl02262), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), GIIM (pfam08388), COG3436 (Transposase ), TnpB_IS66 (pfam05717), InsE (COG2963)
COG3335 (Transposase ), COG3415 (Transposase )