myRT

myRT report for GCA_004119975.1_ASM411997v1

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Seq: CP026136.1 Klebsiella pneumoniae strain F77 chromosome, complete genome (5536091 bp)
Overview 1 RT 1: 1228599-1233484 bp 2 RT 2: 1392641-1395417 bp 3 RT 3: 1845811-1850683 bp 4 RT 4: 1866424-1872686 bp 5 RT 5: 3119576-3123714 bp 6 RT 6: 3270867-3274966 bp 7 RT 7: 3343699-3347961 bp 8 RT 8: 3663014-3667040 bp 9 RT 9: 3670725-3675563 bp Neighborhood of RT #1 [1228599, 1233489] Phage_GPA RVT-GII DinI Neighborhood of RT #2 [1392641, 1395417] RVT-GII Neighborhood of RT #3 [1845811, 1850697] dacD RVT-GII PRK10016 YccC Neighborhood of RT #4 [1866424, 1872686] STKc_PknB_like RVT-Retrons AAA_15 Neighborhood of RT #5 [3119576, 3123714] umuC PRK10276 RVT-GII Neighborhood of RT #6 [3270867, 3274977] umuC PRK10276 RVT-GII DinI Neighborhood of RT #7 [3343699, 3347999] PRK10597 RVT-GII PRK05318 Neighborhood of RT #8 [3663014, 3667924] DinI RVT-GII Phage_GPA Neighborhood of RT #9 [3670725, 3675613] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int Feature: gene Location: 1228599-1230983 bp Ori: QAW66282.1 Feature: domain Description: Phage_GPA Location: 1229163-1230129 bp Feature: domain Description: Phage_GPA Location: 1 2291 63-1 2301 29 bp Feature: gene Location: 1231213-1231464 bp Feature: gene Location: 1231464-1232948 bp Ori: QAW66284.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1231866-1232556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 231 866-1 232556 bp Feature: gene Location: 1233056-1233244 bp Feature: gene Location: 1233256-1233489 bp Ori: QAW66286.1 Feature: domain Description: DinI Location: 1233301-1233484 bp Feature: domain Description: DinI Location: 1 233301 -1 233484 bp Feature: gene Location: 1392641-1392844 bp Feature: gene Location: 1392837-1393175 bp Feature: gene Location: 1393272-1394756 bp Ori: QAW66444.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1393674-1394364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 393674-1 394364 bp Feature: gene Location: 1394756-1395007 bp Feature: gene Location: 1395160-1395417 bp Feature: gene Location: 1845811-1846980 bp Ori: QAW66826.1 Feature: domain Description: dacD Location: 1845820-1846975 bp Feature: domain Description: dacD Location: 1 845820-1 846975 bp Feature: gene Location: 1847250-1847501 bp Feature: gene Location: 1847501-1848985 bp Ori: QAW66828.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1847903-1848593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 847903-1 848593 bp Feature: gene Location: 1849067-1849540 bp Ori: QAW66829.1 Feature: domain Description: PRK10016 Location: 1849070-1849529 bp Feature: domain Description: PRK1 001 6 Location: 1 849070-1 849529 bp Feature: gene Location: 1849639-1850697 bp Ori: QAW66830.1 Feature: domain Description: YccC Location: 1849645-1850683 bp Feature: domain Description: YccC Location: 1 849645-1 850683 bp Feature: gene Location: 1866424-1867527 bp Ori: QAW66850.1 Feature: domain Description: STKc_PknB_like Location: 1866556-1866997 bp Feature: domain Description: STKc_PknB_like Location: 1 866556-1 866997 bp Feature: gene Location: 1867597-1867839 bp Feature: gene Location: 1868086-1869186 bp Ori: QAW66851.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1868269-1868797 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 868269-1 868797 bp Feature: gene Location: 1869301-1871577 bp Ori: QAW66852.1 Feature: domain Description: AAA_15 Location: 1869334-1870342 bp Feature: domain Description: AAA_1 5 Location: 1 869334-1 870342 bp Feature: gene Location: 1872456-1872686 bp Feature: gene Location: 3119576-3120841 bp Ori: QAW68029.1 Feature: domain Description: umuC Location: 3119579-3120839 bp Feature: domain Description: umuC Location: 31 1 9579-31 20839 bp Feature: gene Location: 3120843-3121262 bp Ori: QAW68030.1 Feature: domain Description: PRK10276 Location: 3120846-3121257 bp Feature: domain Description: PRK1 0276 Location: 31 20846-31 21 257 bp Feature: gene Location: 3121342-3122826 bp Ori: QAW68031.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3121744-3122434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 21 744-31 22434 bp Feature: gene Location: 3122826-3123077 bp Feature: gene Location: 3123625-3123714 bp Feature: gene Location: 3270867-3272132 bp Ori: QAW68178.1 Feature: domain Description: umuC Location: 3270870-3272130 bp Feature: domain Description: umuC Location: 3270870-32721 30 bp Feature: gene Location: 3272135-3272554 bp Ori: QAW68179.1 Feature: domain Description: PRK10276 Location: 3272138-3272549 bp Feature: domain Description: PRK1 0276 Location: 32721 38-3272549 bp Feature: gene Location: 3272633-3274117 bp Ori: QAW68180.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3273035-3273725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3273035-3273725 bp Feature: gene Location: 3274117-3274368 bp Feature: gene Location: 3274735-3274977 bp Ori: QAW68182.1 Feature: domain Description: DinI Location: 3274786-3274966 bp Feature: domain Description: DinI Location: 3274786-3274966 bp Feature: gene Location: 3343699-3343989 bp Feature: gene Location: 3344001-3344234 bp Ori: QAW68254.1 Feature: domain Description: PRK10597 Location: 3344004-3344229 bp Feature: domain Description: PRK1 0597 Location: 3344004-3344229 bp Feature: gene Location: 3344313-3345797 bp Ori: QAW68255.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3344715-3345405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334471 5-3345405 bp Feature: gene Location: 3345797-3346048 bp Feature: gene Location: 3346638-3347999 bp Ori: QAW68257.1 Feature: domain Description: PRK05318 Location: 3346662-3347961 bp Feature: domain Description: PRK0531 8 Location: 3346662-3347961 bp Feature: gene Location: 3663014-3663319 bp Ori: QAW68545.1 Feature: domain Description: DinI Location: 3663128-3663314 bp Feature: domain Description: DinI Location: 36631 28-366331 4 bp Feature: gene Location: 3663258-3663446 bp Feature: gene Location: 3663547-3665031 bp Ori: QAW68546.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3663949-3664639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3663949-3664639 bp Feature: gene Location: 3665031-3665282 bp Feature: gene Location: 3665510-3667924 bp Ori: QAW68548.1 Feature: domain Description: Phage_GPA Location: 3666074-3667040 bp Feature: domain Description: Phage_GPA Location: 3666074-3667040 bp Feature: gene Location: 3670725-3671603 bp Ori: QAW68556.1 Feature: domain Description: Phage_CI_repr Location: 3670752-3670935 bp Feature: domain Description: Phage_CI_repr Location: 3670752-3670935 bp Feature: domain Description: Phage_CI_repr Location: 3671064-3671256 bp Feature: domain Description: Phage_CI_repr Location: 3671 064-3671 256 bp Feature: domain Description: Phage_CI_C Location: 3671283-3671577 bp Feature: domain Description: Phage_CI_C Location: 3671 283-3671 577 bp Feature: gene Location: 3671615-3672559 bp Feature: gene Location: 3672658-3674142 bp Ori: QAW68558.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3673060-3673750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3673060-3673750 bp Feature: gene Location: 3674142-3674393 bp Feature: gene Location: 3674561-3675613 bp Ori: QAW68560.1 Feature: domain Description: int Location: 3674564-3675563 bp Feature: domain Description: int Location: 3674564-3675563 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), STKc_PknB_like (cd14014), RVT-Retrons, AAA_15 (pfam13175), umuC (PRK03609)
PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PRK10597 (DNA damage-inducible protein I; Provisional), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), int (PHA02601)

Seq: CP026139.1 Klebsiella pneumoniae strain F77 plasmid pF77_3, complete sequence (86594 bp)
Overview 1 RT 1: 39750-42852 bp Neighborhood of RT #1 [39750, 42866] RVT-GII PRK10276 Feature: gene Location: 39750-40028 bp Feature: gene Location: 40087-40317 bp Feature: gene Location: 40551-42035 bp Ori: QAW70716.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40953-41643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40953-41643 bp Feature: gene Location: 42035-42286 bp Feature: gene Location: 42441-42866 bp Ori: QAW70718.1 Feature: domain Description: PRK10276 Location: 42444-42852 bp Feature: domain Description: PRK102 76 Location: 42 444-42 852 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: CP026138.1 Klebsiella pneumoniae strain F77 plasmid pF77_2, complete sequence (113246 bp)
Overview 1 RT 1: 66621-70648 bp Neighborhood of RT #1 [66621, 70665] INT_P4_C RVT-GII YafO_toxin Feature: gene Location: 66621-67001 bp Feature: gene Location: 66996-68096 bp Ori: QAW70628.1 Feature: domain Description: INT_P4_C Location: 67455-68001 bp Feature: domain Description: INT_P4_C Location: 67455-68001 bp Feature: gene Location: 68183-69667 bp Ori: QAW70629.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68585-69275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68585-69275 bp Feature: gene Location: 69667-69918 bp Feature: gene Location: 70255-70665 bp Ori: QAW70631.1 Feature: domain Description: YafO_toxin Location: 70363-70648 bp Feature: domain Description: YafO_toxin Location: 703 63 -70648 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), RVT-GII, YafO_toxin (pfam13957)