myRT

myRT report for GCA_004119995.1_ASM411999v1

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Seq: CP026140.1 Klebsiella pneumoniae strain F127 chromosome, complete genome (5511434 bp)
Overview 1 RT 1: 1224871-1229756 bp 2 RT 2: 1388913-1391689 bp 3 RT 3: 1840883-1845755 bp 4 RT 4: 1861496-1867758 bp 5 RT 5: 3097588-3101726 bp 6 RT 6: 3248879-3252978 bp 7 RT 7: 3321710-3325972 bp 8 RT 8: 3646825-3651663 bp Neighborhood of RT #1 [1224871, 1229761] Phage_GPA RVT-GII DinI Neighborhood of RT #2 [1388913, 1391689] RVT-GII Neighborhood of RT #3 [1840883, 1845769] dacD RVT-GII PRK10016 YccC Neighborhood of RT #4 [1861496, 1867758] STKc_PknB_like RVT-Retrons AAA_15 Neighborhood of RT #5 [3097588, 3101726] umuC PRK10276 RVT-GII Neighborhood of RT #6 [3248879, 3252989] umuC PRK10276 RVT-GII DinI Neighborhood of RT #7 [3321710, 3326010] PRK10597 RVT-GII PRK05318 Neighborhood of RT #8 [3646825, 3651713] Phage_CI_repr Phage_CI_repr Phage_CI_C RVT-GII int Feature: gene Location: 1224871-1227255 bp Ori: QAW71955.1 Feature: domain Description: Phage_GPA Location: 1225435-1226401 bp Feature: domain Description: Phage_GPA Location: 1 225435-1 226401 bp Feature: gene Location: 1227485-1227736 bp Feature: gene Location: 1227736-1229220 bp Ori: QAW71957.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1228138-1228828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2281 38-1 228828 bp Feature: gene Location: 1229328-1229516 bp Feature: gene Location: 1229528-1229761 bp Ori: QAW71959.1 Feature: domain Description: DinI Location: 1229573-1229756 bp Feature: domain Description: DinI Location: 1 229573-1 229756 bp Feature: gene Location: 1388913-1389116 bp Feature: gene Location: 1389109-1389447 bp Feature: gene Location: 1389544-1391028 bp Ori: QAW72118.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1389946-1390636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 389946-1 390636 bp Feature: gene Location: 1391028-1391279 bp Feature: gene Location: 1391432-1391689 bp Feature: gene Location: 1840883-1842052 bp Ori: QAW72500.1 Feature: domain Description: dacD Location: 1840892-1842047 bp Feature: domain Description: dacD Location: 1 840892-1 842047 bp Feature: gene Location: 1842322-1842573 bp Feature: gene Location: 1842573-1844057 bp Ori: QAW72502.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1842975-1843665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 842975-1 843665 bp Feature: gene Location: 1844139-1844612 bp Ori: QAW72503.1 Feature: domain Description: PRK10016 Location: 1844142-1844601 bp Feature: domain Description: PRK1 001 6 Location: 1 8441 42-1 844601 bp Feature: gene Location: 1844711-1845769 bp Ori: QAW72504.1 Feature: domain Description: YccC Location: 1844717-1845755 bp Feature: domain Description: YccC Location: 1 84471 7-1 845755 bp Feature: gene Location: 1861496-1862599 bp Ori: QAW72524.1 Feature: domain Description: STKc_PknB_like Location: 1861628-1862069 bp Feature: domain Description: STKc_PknB_like Location: 1 861 628-1 862069 bp Feature: gene Location: 1862669-1862911 bp Feature: gene Location: 1863158-1864258 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1863341-1863869 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 863341 -1 863869 bp Feature: gene Location: 1864373-1866649 bp Ori: QAW72525.1 Feature: domain Description: AAA_15 Location: 1864406-1865414 bp Feature: domain Description: AAA_1 5 Location: 1 864406-1 86541 4 bp Feature: gene Location: 1867528-1867758 bp Feature: gene Location: 3097588-3098853 bp Ori: QAW73685.1 Feature: domain Description: umuC Location: 3097591-3098851 bp Feature: domain Description: umuC Location: 3097591 -3098851 bp Feature: gene Location: 3098855-3099274 bp Ori: QAW73686.1 Feature: domain Description: PRK10276 Location: 3098858-3099269 bp Feature: domain Description: PRK1 0276 Location: 3098858-3099269 bp Feature: gene Location: 3099354-3100838 bp Ori: QAW73687.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3099756-3100446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3099756-31 00446 bp Feature: gene Location: 3100838-3101089 bp Feature: gene Location: 3101637-3101726 bp Feature: gene Location: 3248879-3250144 bp Ori: QAW73833.1 Feature: domain Description: umuC Location: 3248882-3250142 bp Feature: domain Description: umuC Location: 3248882-32501 42 bp Feature: gene Location: 3250147-3250566 bp Ori: QAW73834.1 Feature: domain Description: PRK10276 Location: 3250150-3250561 bp Feature: domain Description: PRK1 0276 Location: 32501 50-3250561 bp Feature: gene Location: 3250645-3252129 bp Ori: QAW73835.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3251047-3251737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3251 047-3251 737 bp Feature: gene Location: 3252129-3252380 bp Feature: gene Location: 3252747-3252989 bp Ori: QAW73837.1 Feature: domain Description: DinI Location: 3252798-3252978 bp Feature: domain Description: DinI Location: 3252798-3252978 bp Feature: gene Location: 3321710-3322000 bp Feature: gene Location: 3322012-3322245 bp Ori: QAW73909.1 Feature: domain Description: PRK10597 Location: 3322015-3322240 bp Feature: domain Description: PRK1 0597 Location: 332201 5-3322240 bp Feature: gene Location: 3322324-3323808 bp Ori: QAW73910.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3322726-3323416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3322726-332341 6 bp Feature: gene Location: 3323808-3324059 bp Feature: gene Location: 3324649-3326010 bp Ori: QAW73912.1 Feature: domain Description: PRK05318 Location: 3324673-3325972 bp Feature: domain Description: PRK0531 8 Location: 3324673-3325972 bp Feature: gene Location: 3646825-3647703 bp Ori: QAW74207.1 Feature: domain Description: Phage_CI_repr Location: 3646852-3647035 bp Feature: domain Description: Phage_CI_repr Location: 3646852-3647035 bp Feature: domain Description: Phage_CI_repr Location: 3647164-3647356 bp Feature: domain Description: Phage_CI_repr Location: 36471 64-3647356 bp Feature: domain Description: Phage_CI_C Location: 3647383-3647677 bp Feature: domain Description: Phage_CI_C Location: 3647383-3647677 bp Feature: gene Location: 3647715-3648659 bp Feature: gene Location: 3648758-3650242 bp Ori: QAW74209.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3649160-3649850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36491 60-3649850 bp Feature: gene Location: 3650242-3650493 bp Feature: gene Location: 3650661-3651713 bp Ori: QAW74211.1 Feature: domain Description: int Location: 3650664-3651663 bp Feature: domain Description: int Location: 3650664-3651 663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-GII, DinI (pfam06183), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), STKc_PknB_like (cd14014), RVT-Retrons, AAA_15 (pfam13175), umuC (PRK03609)
PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), PRK10597 (DNA damage-inducible protein I; Provisional), PRK05318 (deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), int (PHA02601)

Seq: CP026141.1 Klebsiella pneumoniae strain F127 plasmid pF127_1, complete sequence (164501 bp)
Overview 1 RT 1: 26706-30802 bp 2 RT 2: 115751-119953 bp Neighborhood of RT #1 [26706, 30927] RVT_N RVT-GII GIIM HNHc DUF1380 Neighborhood of RT #2 [115751, 119970] Plasmid_stab_B Plasmid_stab_B StbA RVT-GII PRK10276 Feature: gene Location: 26706-26936 bp Feature: gene Location: 27199-27456 bp Feature: gene Location: 28336-30003 bp Ori: QAW76141.1 Gene: ltrA Feature: domain Description: RVT_N Location: 28384-28621 bp Feature: domain Description: RVT_N Location: 2 8384-2 862 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28672-29314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 8672 -2 9314 bp Feature: domain Description: GIIM Note: maturase Location: 29365-29599 bp Feature: domain Description: GIIM Note: maturase Location: 2 9365-2 9599 bp Feature: domain Description: HNHc Note: nucleases Location: 29809-29968 bp Feature: domain Description: HNHc Note: nucleases Location: 2 9809-2 9968 bp Feature: gene Location: 30317-30508 bp Feature: gene Location: 30505-30927 bp Ori: QAW76143.1 Feature: domain Description: DUF1380 Location: 30508-30802 bp Feature: domain Description: DUF1380 Location: 30508-30802 bp Feature: gene Location: 115751-116422 bp Ori: QAW76247.1 Feature: domain Description: Plasmid_stab_B Location: 115766-115973 bp Feature: domain Description: Plasmid_stab_B Location: 115766-115973 bp Feature: domain Description: Plasmid_stab_B Location: 116078-116285 bp Feature: domain Description: Plasmid_stab_B Location: 116078-1162 85 bp Feature: gene Location: 116425-117396 bp Ori: QAW76248.1 Feature: domain Description: StbA Location: 116428-117373 bp Feature: domain Description: StbA Location: 11642 8-117373 bp Feature: gene Location: 117645-119129 bp Ori: QAW76249.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118047-118737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118047-118737 bp Feature: gene Location: 119129-119380 bp Feature: gene Location: 119539-119970 bp Ori: QAW76251.1 Feature: domain Description: PRK10276 Location: 119590-119953 bp Feature: domain Description: PRK102 76 Location: 119590-119953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128), Plasmid_stab_B (pfam10784), StbA (pfam06406), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)