myRT

myRT report for GCA_004124175.2_ASM412417v2

Download annotations/find similar RTs

Seq: CP033352.2 Salmonella enterica subsp. enterica strain CFSA629 chromosome, complete genome (4999270 bp)
Overview 1 RT 1: 694583-700753 bp 2 RT 2: 4988272-4994569 bp Neighborhood of RT #1 [694583, 700755] 5 RVT-UG11 PRK10201 PRK05658 Neighborhood of RT #2 [4988272, 4994631] PRK10216 PRK10473 RVT-Retrons PRK09692 Feature: gene Location: 694583-696283 bp Ori: QAX39665.2 Feature: domain Description: 5 Location: 695807-696101 bp Feature: domain Description: 5 Location: 695807-6961 01 bp Feature: gene Location: 697035-697220 bp Feature: gene Location: 697190-697954 bp Ori: QAX39667.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 697313-697766 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 69731 3-697766 bp Feature: gene Location: 698278-698784 bp Ori: QAX39668.1 Feature: domain Description: PRK10201 Location: 698281-698779 bp Feature: domain Description: PRK1 0201 Location: 698281 -698779 bp Feature: gene Location: 698908-700755 bp Ori: QAX43684.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 698914-700753 bp Feature: domain Description: PRK05658 Location: 69891 4-700753 bp Feature: gene Location: 4988272-4989231 bp Ori: QAX43645.1 Gene: yidZ Feature: domain Description: PRK10216 Location: 4988275-4989226 bp Feature: domain Description: PRK1 021 6 Location: 4988275-4989226 bp Feature: gene Location: 4989200-4990387 bp Ori: QAX43646.1 Feature: domain Description: PRK10473 Location: 4989203-4990379 bp Feature: domain Description: PRK1 0473 Location: 4989203-4990379 bp Feature: gene Location: 4991189-4992058 bp Ori: QAX43871.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4991234-4991819 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4991 234-4991 81 9 bp Feature: gene Location: 4992124-4993086 bp Feature: gene Location: 4993411-4994631 bp Feature: domain Description: PRK09692 Location: 4993420-4994569 bp Feature: domain Description: PRK09692 Location: 4993420-4994569 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 5 (PHA02596), RVT-UG11, PRK10201 (G/U mismatch-specific DNA glycosylase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10216 (HTH-type transcriptional regulator YidZ), PRK10473 (MdtL family multidrug efflux MFS transporter), RVT-Retrons, PRK09692 (Integrase; provisional)