myRT

myRT report for GCA_004135165.1_ASM413516v1

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Seq: CP035478.1 Escherichia coli strain U13A plasmid pU13A_A, complete sequence (149312 bp)
Overview 1 RT 1: 100777-104212 bp 2 RT 2: 115266-117615 bp Neighborhood of RT #1 [100777, 104277] InsE PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [115266, 117623] PHA02517 RVT-GII PRK10173 PRK10173 Feature: gene Location: 100777-101181 bp Ori: QAY52367.1 Feature: domain Description: InsE Location: 100807-101143 bp Feature: domain Description: InsE Location: 1 00807-1 01 1 43 bp Feature: gene Location: 101210-101566 bp Ori: QAY52368.1 Feature: domain Description: PHA02517 Location: 101213-101522 bp Feature: domain Description: PHA0251 7 Location: 1 01 21 3-1 01 522 bp Feature: gene Location: 101683-103206 bp Ori: QAY52369.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101956-102688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 956-1 02688 bp Feature: domain Description: GIIM Note: maturase Location: 102763-102961 bp Feature: domain Description: GIIM Note: maturase Location: 1 02763-1 02961 bp Feature: gene Location: 103500-103871 bp Feature: gene Location: 103798-104277 bp Ori: QAY52371.1 Feature: domain Description: PHA02517 Location: 103858-104212 bp Feature: domain Description: PHA0251 7 Location: 1 03858-1 0421 2 bp Feature: gene Location: 115266-115745 bp Ori: QAY52387.1 Feature: domain Description: PHA02517 Location: 115326-115680 bp Feature: domain Description: PHA0251 7 Location: 1 1 5326-1 1 5680 bp Feature: gene Location: 115672-116043 bp Feature: gene Location: 116337-116840 bp Ori: QAY52389.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116610-116682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 661 0-1 1 6682 bp Feature: gene Location: 116879-117199 bp Ori: QAY52390.1 Gene: agp_1 Feature: domain Description: PRK10173 Location: 116882-117110 bp Feature: domain Description: PRK1 01 73 Location: 1 1 6882-1 1 71 1 0 bp Feature: gene Location: 117174-117623 bp Ori: QAY52391.1 Gene: agp_2 Feature: domain Description: PRK10173 Location: 117177-117615 bp Feature: domain Description: PRK1 01 73 Location: 1 1 71 77-1 1 761 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional)

Seq: CP035477.1 Escherichia coli strain U13A chromosome, complete genome (5061273 bp)
Overview 1 RT 1: 1345083-1351425 bp 2 RT 2: 4690373-4695692 bp Neighborhood of RT #1 [1345083, 1351425] PRK11388 RVT-Retrons Neighborhood of RT #2 [4690373, 4695718] YesM RVT-GII GIIM RVT-GII PFLE_PFLC Feature: gene Location: 1345083-1347002 bp Ori: QAY48794.1 Gene: dhaR Feature: domain Description: PRK11388 Location: 1345086-1346994 bp Feature: domain Description: PRK11388 Location: 1345086-1346994 bp Feature: gene Location: 1347484-1347723 bp Feature: gene Location: 1348294-1350051 bp Ori: QAY48796.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1348438-1349056 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1348438-1349056 bp Feature: gene Location: 1350073-1350240 bp Feature: gene Location: 1350298-1351425 bp Feature: gene Location: 4690373-4691602 bp Ori: QAY51891.1 Gene: ypdA_2 Feature: domain Description: YesM Location: 4690853-4691594 bp Feature: domain Description: YesM Location: 4690853-4691594 bp Feature: gene Location: 4691675-4691863 bp Feature: gene Location: 4692185-4692667 bp Ori: QAY51893.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4692194-4692434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4692 194-4692 434 bp Feature: domain Description: GIIM Note: maturase Location: 4692482-4692662 bp Feature: domain Description: GIIM Note: maturase Location: 4692 482 -4692 662 bp Feature: gene Location: 4692734-4693273 bp Ori: QAY51894.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4693064-4693142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4693064-4693142 bp Feature: gene Location: 4693759-4694664 bp Feature: gene Location: 4694801-4695718 bp Ori: QAY51896.1 Gene: cutD_3 Feature: domain Description: PFLE_PFLC Location: 4694837-4695692 bp Feature: domain Description: PFLE_PFLC Location: 4694837-4695692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11388 (DNA-binding transcriptional regulator DhaR; Provisional), RVT-Retrons, YesM (COG2972), RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494)