myRT

myRT report for GCA_004135205.1_ASM413520v1

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Seq: CP035490.1 Hahella sp. KA22 chromosome, complete genome (6960771 bp)
Overview 1 RT 1: 258973-263507 bp 2 RT 2: 2954964-2959048 bp 3 RT 3: 3395911-3404881 bp Neighborhood of RT #1 [258973, 263581] TerB DUF393 RVT-Retrons PBP2_HisK MFS_NepI_like Neighborhood of RT #2 [2954964, 2959053] COG3415 DDE_3 PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #3 [3395911, 3404881] WGR_DNA_ligase HEAT_2 HEAT_2 RVT-Retrons RacX Feature: gene Location: 258973-259422 bp Ori: QAY52759.1 Feature: domain Description: TerB Location: 258991-259399 bp Feature: domain Description: TerB Location: 258991 -259399 bp Feature: gene Location: 259441-259806 bp Ori: QAY52760.1 Feature: domain Description: DUF393 Location: 259465-259798 bp Feature: domain Description: DUF393 Location: 259465-259798 bp Feature: gene Location: 259829-261163 bp Ori: QAY52761.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 260291-260921 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 260291 -260921 bp Feature: gene Location: 261435-262310 bp Ori: QAY52762.1 Feature: domain Description: PBP2_HisK Location: 261627-262158 bp Feature: domain Description: PBP2_HisK Location: 261 627-2621 58 bp Feature: gene Location: 262376-263581 bp Ori: QAY52763.1 Feature: domain Description: MFS_NepI_like Location: 262418-263507 bp Feature: domain Description: MFS_NepI_like Location: 26241 8-263507 bp Feature: gene Location: 2954964-2955998 bp Ori: QAY55013.1 Feature: domain Description: COG3415 Location: 2955000-2955435 bp Feature: domain Description: COG341 5 Location: 2955000-2955435 bp Feature: domain Description: DDE_3 Location: 2955480-2955903 bp Feature: domain Description: DDE_3 Location: 2955480-2955903 bp Feature: gene Location: 2956033-2956484 bp Feature: domain Description: PHA02517 Location: 2956036-2956267 bp Feature: domain Description: PHA0251 7 Location: 2956036-2956267 bp Feature: gene Location: 2956550-2957806 bp Ori: QAY55014.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2956754-2957411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2956754-295741 1 bp Feature: domain Description: GIIM Note: maturase Location: 2957492-2957717 bp Feature: domain Description: GIIM Note: maturase Location: 2957492-295771 7 bp Feature: gene Location: 2958251-2958733 bp Ori: QAY55015.1 Feature: domain Description: PHA02517 Location: 2958320-2958668 bp Feature: domain Description: PHA0251 7 Location: 2958320-2958668 bp Feature: gene Location: 2958733-2959053 bp Ori: QAY55016.1 Feature: domain Description: InsE Location: 2958739-2959048 bp Feature: domain Description: InsE Location: 2958739-2959048 bp Feature: gene Location: 3395911-3399042 bp Ori: QAY55376.1 Feature: domain Description: WGR_DNA_ligase Location: 3395926-3396157 bp Feature: domain Description: WGR_DNA_ligase Location: 3395926-33961 57 bp Feature: domain Description: HEAT_2 Location: 3396241-3396490 bp Feature: domain Description: HEAT_2 Location: 3396241 -3396490 bp Feature: domain Description: HEAT_2 Location: 3398581-3398791 bp Feature: domain Description: HEAT_2 Location: 3398581 -3398791 bp Feature: gene Location: 3399053-3400726 bp Feature: gene Location: 3401180-3402943 bp Ori: QAY55378.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3401729-3402350 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3401 729-3402350 bp Feature: gene Location: 3403018-3403710 bp Ori: QAY55379.1 Feature: domain Description: RacX Location: 3403030-3403702 bp Feature: domain Description: RacX Location: 3403030-3403702 bp Feature: gene Location: 3403823-3404881 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TerB (pfam05099), DUF393 (pfam04134), RVT-Retrons, PBP2_HisK (cd13704), MFS_NepI_like (cd17324), COG3415 (Transposase ), DDE_3 (pfam13358), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)
InsE (COG2963), WGR_DNA_ligase (cd07998), HEAT_2 (pfam13646), RacX (COG1794)