myRT

myRT report for GCA_004135755.1_ASM413575v1

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Seq: CP012672.1 Sorangium cellulosum strain So ce836 chromosome, complete genome (14598830 bp)
Overview 1 RT 1: 2215269-2221960 bp 2 RT 2: 2307527-2316942 bp 3 RT 3: 3208758-3220852 bp 4 RT 4: 5489727-5497448 bp 5 RT 5: 8641368-8649021 bp 6 RT 6: 10357593-10363211 bp 7 RT 7: 13530042-13536501 bp Neighborhood of RT #1 [2215269, 2222049] COG3943 RVT-UG5 Lhr DUF2791 Neighborhood of RT #2 [2307527, 2316953] COG4941 RpoE RVT-GII GIIM SpvB SpvB VCBS VCBS VCBS FG-GAP VCBS TcdB_toxin_midN RHS_repeat RHS_repeat RHS_repeat RHS_repeat PHA02517 Neighborhood of RT #3 [3208758, 3221307] PAS_4 PAS_4 STAS_RsbR_RsbS_like RVT-Retrons SWIM WD40 WD40 WD40 HEAT_2 HEAT HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 Neighborhood of RT #4 [5489727, 5497492] RpoE RVT-GII GIIM ViaA Neighborhood of RT #5 [8641368, 8649021] TPR PEGA RVT-GII GIIM Neighborhood of RT #6 [10357593, 10363708] COG4584 IstB_IS21 RVT-GII GIIM PRK08181 VI_Rhs_Vgr Neighborhood of RT #7 [13530042, 13536501] Lipase_3 DUF772 DDE_Tnp_1 DDE_Tnp_1_6 RVT-GII Cytochrom_C Feature: gene Location: 2215269-2215484 bp Ori: AUX29544.1 Feature: domain Description: COG3943 Location: 2215272-2215449 bp Feature: domain Description: COG3943 Location: 221 5272-221 5449 bp Feature: gene Location: 2215477-2215611 bp Feature: gene Location: 2215608-2218604 bp Ori: AUX29546.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2216073-2216514 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 221 6073-221 651 4 bp Feature: gene Location: 2218601-2220739 bp Ori: AUX29547.1 Feature: domain Description: Lhr Location: 2218622-2220266 bp Feature: domain Description: Lhr Location: 221 8622-2220266 bp Feature: gene Location: 2220736-2222049 bp Ori: AUX29548.1 Feature: domain Description: DUF2791 Location: 2220763-2221960 bp Feature: domain Description: DUF2791 Location: 2220763-2221 960 bp Feature: gene Location: 2307527-2308282 bp Ori: AUX29623.1 Feature: domain Description: COG4941 Location: 2307569-2308268 bp Feature: domain Description: COG4941 Location: 2307569-2308268 bp Feature: gene Location: 2308054-2309142 bp Ori: AUX29624.1 Feature: domain Description: RpoE Location: 2308099-2308540 bp Feature: domain Description: RpoE Location: 2308099-2308540 bp Feature: gene Location: 2309931-2311283 bp Ori: AUX29625.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2310249-2310882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231 0249-231 0882 bp Feature: domain Description: GIIM Note: maturase Location: 2310972-2311179 bp Feature: domain Description: GIIM Note: maturase Location: 231 0972-231 1 1 79 bp Feature: gene Location: 2311410-2316146 bp Ori: AUX29626.1 Feature: domain Description: SpvB Location: 2311581-2311731 bp Feature: domain Description: SpvB Location: 231 1 581 -231 1 731 bp Feature: domain Description: SpvB Location: 2311932-2312106 bp Feature: domain Description: SpvB Location: 231 1 932-231 21 06 bp Feature: domain Description: VCBS Location: 2312421-2312535 bp Feature: domain Description: VCBS Location: 231 2421 -231 2535 bp Feature: domain Description: VCBS Location: 2312736-2312961 bp Feature: domain Description: VCBS Location: 231 2736-231 2961 bp Feature: domain Description: VCBS Location: 2313135-2313342 bp Feature: domain Description: VCBS Location: 231 31 35-231 3342 bp Feature: domain Description: FG-GAP Location: 2313495-2313534 bp Feature: domain Description: FG-GAP Location: 231 3495-231 3534 bp Feature: domain Description: VCBS Location: 2313681-2313741 bp Feature: domain Description: VCBS Location: 231 3681 -231 3741 bp Feature: domain Description: TcdB_toxin_midN Location: 2314017-2314155 bp Feature: domain Description: TcdB_toxin_midN Location: 231 401 7-231 41 55 bp Feature: domain Description: RHS_repeat Location: 2314926-2315025 bp Feature: domain Description: RHS_repeat Location: 231 4926-231 5025 bp Feature: domain Description: RHS_repeat Location: 2315325-2315418 bp Feature: domain Description: RHS_repeat Location: 231 5325-231 541 8 bp Feature: domain Description: RHS_repeat Location: 2315448-2315550 bp Feature: domain Description: RHS_repeat Location: 231 5448-231 5550 bp Feature: domain Description: RHS_repeat Location: 2315637-2315739 bp Feature: domain Description: RHS_repeat Location: 231 5637-231 5739 bp Feature: gene Location: 2316078-2316953 bp Ori: AUX29627.1 Gene: isftu1 Feature: domain Description: PHA02517 Location: 2316147-2316942 bp Feature: domain Description: PHA0251 7 Location: 231 61 47-231 6942 bp Feature: gene Location: 3208758-3209936 bp Ori: AUX30275.1 Feature: domain Description: PAS_4 Location: 3208773-3208866 bp Feature: domain Description: PAS_4 Location: 3208773-3208866 bp Feature: domain Description: PAS_4 Location: 3209115-3209436 bp Feature: domain Description: PAS_4 Location: 32091 1 5-3209436 bp Feature: domain Description: STAS_RsbR_RsbS_like Location: 3209589-3209913 bp Feature: domain Description: STAS_RsbR_RsbS_like Location: 3209589-320991 3 bp Feature: gene Location: 3210278-3210727 bp Feature: gene Location: 3210790-3212256 bp Ori: AUX30277.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3211345-3211996 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 321 1 345-321 1 996 bp Feature: gene Location: 3212669-3214549 bp Ori: AUX30278.1 Feature: domain Description: SWIM Location: 3214142-3214244 bp Feature: domain Description: SWIM Location: 321 41 42-321 4244 bp Feature: gene Location: 3214546-3221307 bp Ori: AUX30279.1 Feature: domain Description: WD40 Location: 3214843-3214942 bp Feature: domain Description: WD40 Location: 321 4843-321 4942 bp Feature: domain Description: WD40 Location: 3215023-3215098 bp Feature: domain Description: WD40 Location: 321 5023-321 5098 bp Feature: domain Description: WD40 Location: 3215134-3215224 bp Feature: domain Description: WD40 Location: 321 51 34-321 5224 bp Feature: domain Description: HEAT_2 Location: 3215647-3215788 bp Feature: domain Description: HEAT_2 Location: 321 5647-321 5788 bp Feature: domain Description: HEAT Location: 3215839-3215905 bp Feature: domain Description: HEAT Location: 321 5839-321 5905 bp Feature: domain Description: HEAT_2 Location: 3216526-3216778 bp Feature: domain Description: HEAT_2 Location: 321 6526-321 6778 bp Feature: domain Description: HEAT_2 Location: 3216901-3216985 bp Feature: domain Description: HEAT_2 Location: 321 6901 -321 6985 bp Feature: domain Description: HEAT_2 Location: 3217021-3217228 bp Feature: domain Description: HEAT_2 Location: 321 7021 -321 7228 bp Feature: domain Description: HEAT_2 Location: 3217552-3217675 bp Feature: domain Description: HEAT_2 Location: 321 7552-321 7675 bp Feature: domain Description: HEAT_2 Location: 3217708-3217879 bp Feature: domain Description: HEAT_2 Location: 321 7708-321 7879 bp Feature: domain Description: HEAT_2 Location: 3217894-3218107 bp Feature: domain Description: HEAT_2 Location: 321 7894-321 81 07 bp Feature: domain Description: HEAT_2 Location: 3218578-3218809 bp Feature: domain Description: HEAT_2 Location: 321 8578-321 8809 bp Feature: domain Description: HEAT_2 Location: 3218938-3219154 bp Feature: domain Description: HEAT_2 Location: 321 8938-321 91 54 bp Feature: domain Description: HEAT_2 Location: 3219235-3219475 bp Feature: domain Description: HEAT_2 Location: 321 9235-321 9475 bp Feature: domain Description: HEAT_2 Location: 3219754-3220021 bp Feature: domain Description: HEAT_2 Location: 321 9754-3220021 bp Feature: domain Description: HEAT_2 Location: 3220060-3220285 bp Feature: domain Description: HEAT_2 Location: 3220060-3220285 bp Feature: domain Description: HEAT_2 Location: 3220621-3220852 bp Feature: domain Description: HEAT_2 Location: 3220621 -3220852 bp Feature: gene Location: 5489727-5491127 bp Feature: gene Location: 5491754-5492788 bp Ori: AUX31959.1 Feature: domain Description: RpoE Location: 5491775-5492195 bp Feature: domain Description: RpoE Location: 5491 775-54921 95 bp Feature: gene Location: 5493616-5494968 bp Ori: AUX31960.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5493934-5494567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5493934-5494567 bp Feature: domain Description: GIIM Note: maturase Location: 5494657-5494864 bp Feature: domain Description: GIIM Note: maturase Location: 5494657-5494864 bp Feature: gene Location: 5495541-5495993 bp Feature: gene Location: 5496056-5497492 bp Ori: AUX31962.1 Feature: domain Description: ViaA Location: 5496608-5497448 bp Feature: domain Description: ViaA Location: 5496608-5497448 bp Feature: gene Location: 8641368-8642996 bp Feature: gene Location: 8643012-8644109 bp Ori: AUX34205.1 Feature: domain Description: TPR Location: 8643153-8643387 bp Feature: domain Description: TPR Location: 86431 53-8643387 bp Feature: domain Description: PEGA Location: 8643438-8643621 bp Feature: domain Description: PEGA Location: 8643438-8643621 bp Feature: gene Location: 8644232-8645584 bp Ori: AUX34206.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8644550-8645183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8644550-86451 83 bp Feature: domain Description: GIIM Note: maturase Location: 8645273-8645480 bp Feature: domain Description: GIIM Note: maturase Location: 8645273-8645480 bp Feature: gene Location: 8646497-8647771 bp Feature: gene Location: 8647873-8649021 bp Feature: gene Location: 10357593-10359080 bp Ori: AUX35506.1 Gene: int Feature: domain Description: COG4584 Location: 10357734-10358430 bp Feature: domain Description: COG4584 Location: 1 0357734-1 0358430 bp Feature: gene Location: 10359077-10359646 bp Ori: AUX35507.1 Feature: domain Description: IstB_IS21 Location: 10359221-10359581 bp Feature: domain Description: IstB_IS21 Location: 1 0359221 -1 0359581 bp Feature: gene Location: 10360150-10361676 bp Ori: AUX35508.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10360477-10361167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0360477-1 0361 1 67 bp Feature: domain Description: GIIM Note: maturase Location: 10361236-10361452 bp Feature: domain Description: GIIM Note: maturase Location: 1 0361 236-1 0361 452 bp Feature: gene Location: 10361873-10362064 bp Ori: AUX35509.1 Feature: domain Description: PRK08181 Location: 10361876-10362038 bp Feature: domain Description: PRK081 81 Location: 1 0361 876-1 0362038 bp Feature: gene Location: 10362137-10363708 bp Ori: AUX35510.1 Feature: domain Description: VI_Rhs_Vgr Location: 10362479-10363211 bp Feature: domain Description: VI_Rhs_Vgr Location: 1 0362479-1 036321 1 bp Feature: gene Location: 13530042-13531226 bp Ori: AUX37870.1 Feature: domain Description: Lipase_3 Location: 13530222-13531182 bp Feature: domain Description: Lipase_3 Location: 1 3530222-1 3531 1 82 bp Feature: gene Location: 13531443-13533032 bp Ori: AUX37871.1 Gene: isftu1 Feature: domain Description: DUF772 Location: 13531614-13531827 bp Feature: domain Description: DUF772 Location: 1 3531 61 4-1 3531 827 bp Feature: domain Description: DDE_Tnp_1 Location: 13532328-13532592 bp Feature: domain Description: DDE_Tnp_1 Location: 1 3532328-1 3532592 bp Feature: domain Description: DDE_Tnp_1_6 Location: 13532715-13533000 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 1 353271 5-1 3533000 bp Feature: gene Location: 13532884-13533708 bp Ori: AUX37872.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13533172-13533313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 35331 72-1 353331 3 bp Feature: gene Location: 13533560-13534969 bp Ori: AUX37873.1 Feature: domain Description: Cytochrom_C Location: 13534625-13534967 bp Feature: domain Description: Cytochrom_C Location: 1 3534625-1 3534967 bp Feature: gene Location: 13535467-13536501 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3943 (Uncharacterized conserved protein ), RVT-UG5, Lhr (COG1201), DUF2791 (pfam10923), COG4941 (Predicted RNA polymerase sigma factor, contains C-terminal TPR domain ), RpoE (COG3343), RVT-GII, GIIM (pfam08388), SpvB (pfam03534), VCBS (pfam13517)
FG-GAP (pfam01839), TcdB_toxin_midN (pfam12256), RHS_repeat (pfam05593), PHA02517 (putative transposase OrfB; Reviewed), PAS_4 (pfam08448), STAS_RsbR_RsbS_like (cd07041), RVT-Retrons, SWIM (pfam04434), WD40 (smart00320), HEAT_2 (pfam13646)
HEAT (sd00044), ViaA (COG2425), TPR (smart00028), PEGA (pfam08308), COG4584 (Transposase ), IstB_IS21 (pfam01695), PRK08181 (transposase; Validated), VI_Rhs_Vgr (TIGR03361), Lipase_3 (pfam01764), DUF772 (pfam05598)
DDE_Tnp_1 (pfam01609), DDE_Tnp_1_6 (pfam13751), Cytochrom_C (pfam00034)