myRT

myRT report for GCA_004135775.1_ASM413577v1

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Seq: CP034399.1 Escherichia coli strain CRE1 chromosome, complete genome (4938997 bp)
Overview 1 RT 1: 318311-324264 bp 2 RT 2: 2116684-2120413 bp 3 RT 3: 2850554-2854330 bp 4 RT 4: 3334581-3343516 bp Neighborhood of RT #1 [318311, 324440] AAA_15 RVT-Retrons Nuc_deoxyrib_tr Neighborhood of RT #2 [2116684, 2120415] InsE RVT-GII GIIM PHA02517 HTH_Tnp_1 Neighborhood of RT #3 [2850554, 2854330] InsE RVT-GII GIIM PHA02517 Neighborhood of RT #4 [3334581, 3343536] PRK09692 RVT-UG3 RVT-UG8 PRK09678 Psu Feature: gene Location: 318311-318541 bp Feature: gene Location: 319454-321700 bp Ori: QAZ80281.1 Feature: domain Description: AAA_15 Location: 319457-320465 bp Feature: domain Description: AAA_1 5 Location: 31 9457-320465 bp Feature: gene Location: 321815-322915 bp Ori: QAZ80282.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 321995-322529 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 321 995-322529 bp Feature: gene Location: 323396-323551 bp Feature: gene Location: 323571-324440 bp Ori: QAZ80283.1 Feature: domain Description: Nuc_deoxyrib_tr Location: 324093-324264 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 324093-324264 bp Feature: gene Location: 2116684-2117423 bp Feature: domain Description: InsE Location: 2116687-2117026 bp Feature: domain Description: InsE Location: 21 1 6687-21 1 7026 bp Feature: gene Location: 2117416-2117787 bp Feature: gene Location: 2118096-2119604 bp Ori: QAZ84280.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2118354-2119086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 8354-21 1 9086 bp Feature: domain Description: GIIM Note: maturase Location: 2119161-2119359 bp Feature: domain Description: GIIM Note: maturase Location: 21 1 91 61 -21 1 9359 bp Feature: gene Location: 2119694-2120167 bp Feature: domain Description: PHA02517 Location: 2119700-2120165 bp Feature: domain Description: PHA0251 7 Location: 21 1 9700-21 201 65 bp Feature: gene Location: 2120212-2120415 bp Feature: domain Description: HTH_Tnp_1 Location: 2120221-2120413 bp Feature: domain Description: HTH_Tnp_1 Location: 21 20221 -21 2041 3 bp Feature: gene Location: 2850554-2851241 bp Feature: domain Description: InsE Location: 2850563-2850812 bp Feature: domain Description: InsE Location: 2850563-285081 2 bp Feature: gene Location: 2851237-2851605 bp Feature: gene Location: 2851914-2853422 bp Ori: QAZ84306.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2852172-2852904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28521 72-2852904 bp Feature: domain Description: GIIM Note: maturase Location: 2852979-2853177 bp Feature: domain Description: GIIM Note: maturase Location: 2852979-28531 77 bp Feature: gene Location: 2853503-2853990 bp Feature: domain Description: PHA02517 Location: 2853506-2853677 bp Feature: domain Description: PHA0251 7 Location: 2853506-2853677 bp Feature: gene Location: 2854073-2854330 bp Feature: gene Location: 3334581-3337283 bp Feature: gene Location: 3337876-3339054 bp Ori: QAZ82837.1 Feature: domain Description: PRK09692 Location: 3337882-3339040 bp Feature: domain Description: PRK09692 Location: 3337882-3339040 bp Feature: gene Location: 3339056-3340252 bp Ori: QAZ82838.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3339341-3339803 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3339341 -3339803 bp Feature: gene Location: 3340256-3342259 bp Ori: QAZ82839.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 3340751-3341198 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 3340751 -3341 1 98 bp Feature: gene Location: 3342708-3342980 bp Ori: QAZ82840.1 Feature: domain Description: PRK09678 Location: 3342717-3342885 bp Feature: domain Description: PRK09678 Location: 334271 7-3342885 bp Feature: gene Location: 3342982-3343536 bp Ori: QAZ82841.1 Feature: domain Description: Psu Location: 3343006-3343516 bp Feature: domain Description: Psu Location: 3343006-334351 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014), InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), HTH_Tnp_1 (pfam01527), PRK09692 (Integrase; provisional), RVT-UG3
RVT-UG8, PRK09678 (DNA-binding transcriptional regulator; Provisional), Psu (pfam07455)