myRT

myRT report for GCA_004135795.1_ASM413579v1

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Seq: CP034408.1 Klebsiella pneumoniae strain NH34 chromosome, complete genome (5427547 bp)
Overview 1 RT 1: 256149-260257 bp 2 RT 2: 1540381-1543533 bp 3 RT 3: 1735419-1740300 bp 4 RT 4: 2274027-2277128 bp 5 RT 5: 2793069-2800446 bp Neighborhood of RT #1 [256149, 260259] DinI RVT-GII PRK10276 umuC Neighborhood of RT #2 [1540381, 1543533] PRK10276 RVT-GII Neighborhood of RT #3 [1735419, 1740305] YccC PRK10016 RVT-GII dacD Neighborhood of RT #4 [2274027, 2277128] PRK10597 RVT-GII Neighborhood of RT #5 [2793069, 2800463] PRK09692 Integrase_1 RVT-UG4 PapC_N FimC Feature: gene Location: 256149-256391 bp Ori: QAZ94866.1 Feature: domain Description: DinI Location: 256200-256380 bp Feature: domain Description: DinI Location: 256200-256380 bp Feature: gene Location: 256758-257009 bp Feature: gene Location: 257009-258493 bp Ori: QAZ94868.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257411-258101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25741 1 -2581 01 bp Feature: gene Location: 258572-258991 bp Ori: QAZ94869.1 Feature: domain Description: PRK10276 Location: 258575-258986 bp Feature: domain Description: PRK1 0276 Location: 258575-258986 bp Feature: gene Location: 258994-260259 bp Ori: QAZ94870.1 Gene: umuC Feature: domain Description: umuC Location: 258997-260257 bp Feature: domain Description: umuC Location: 258997-260257 bp Feature: gene Location: 1540381-1540698 bp Ori: QAZ96013.1 Feature: domain Description: PRK10276 Location: 1540387-1540504 bp Feature: domain Description: PRK1 0276 Location: 1 540387-1 540504 bp Feature: gene Location: 1540698-1540937 bp Feature: gene Location: 1541015-1542499 bp Ori: QAZ96015.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1541417-1542107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 541 41 7-1 5421 07 bp Feature: gene Location: 1542499-1542750 bp Feature: gene Location: 1543204-1543533 bp Feature: gene Location: 1735419-1736477 bp Ori: QAZ96188.1 Feature: domain Description: YccC Location: 1735425-1736463 bp Feature: domain Description: YccC Location: 1 735425-1 736463 bp Feature: gene Location: 1736576-1737049 bp Ori: QAZ96189.1 Gene: sbmC Feature: domain Description: PRK10016 Location: 1736579-1737038 bp Feature: domain Description: PRK1 001 6 Location: 1 736579-1 737038 bp Feature: gene Location: 1737131-1738615 bp Ori: QAZ96190.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1737533-1738223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 737533-1 738223 bp Feature: gene Location: 1738615-1738866 bp Feature: gene Location: 1739136-1740305 bp Ori: QAZ96192.1 Gene: dacD Feature: domain Description: dacD Location: 1739145-1740300 bp Feature: domain Description: dacD Location: 1 7391 45-1 740300 bp Feature: gene Location: 2274027-2274275 bp Feature: gene Location: 2274382-2274615 bp Ori: QAZ96645.1 Feature: domain Description: PRK10597 Location: 2274385-2274610 bp Feature: domain Description: PRK1 0597 Location: 2274385-227461 0 bp Feature: gene Location: 2274694-2276178 bp Ori: QAZ96646.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2275096-2275786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2275096-2275786 bp Feature: gene Location: 2276178-2276429 bp Feature: gene Location: 2276901-2277128 bp Feature: gene Location: 2793069-2794307 bp Feature: domain Description: PRK09692 Location: 2793075-2794257 bp Feature: domain Description: PRK09692 Location: 2793075-2794257 bp Feature: gene Location: 2794487-2794942 bp Ori: QAZ97118.1 Feature: domain Description: Integrase_1 Location: 2794490-2794724 bp Feature: domain Description: Integrase_1 Location: 2794490-2794724 bp Feature: gene Location: 2794984-2797065 bp Ori: QAZ97119.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2795395-2795839 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2795395-2795839 bp Feature: gene Location: 2797062-2799652 bp Feature: domain Description: PapC_N Location: 2797173-2797332 bp Feature: domain Description: PapC_N Location: 27971 73-2797332 bp Feature: gene Location: 2799699-2800463 bp Ori: QAZ97120.1 Feature: domain Description: FimC Location: 2799744-2800446 bp Feature: domain Description: FimC Location: 2799744-2800446 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinI (pfam06183), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), PRK10597 (DNA damage-inducible protein I; Provisional), PRK09692 (Integrase; provisional), Integrase_1 (pfam12835)
RVT-UG4, PapC_N (pfam13954), FimC (COG3121)

Seq: CP034406.1 Klebsiella pneumoniae strain NH34 plasmid pNH34.1, complete sequence (300327 bp)
Overview 1 RT 1: 215259-219097 bp Neighborhood of RT #1 [215259, 219117] INT_Cre_C RVT-GII HHA Feature: gene Location: 215259-215576 bp Feature: gene Location: 215642-216776 bp Feature: domain Description: INT_Cre_C Location: 216065-216620 bp Feature: domain Description: INT_Cre_C Location: 2 16065-2 1662 0 bp Feature: gene Location: 216862-218346 bp Ori: QAZ94458.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217264-217954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 172 64-2 17954 bp Feature: gene Location: 218346-218597 bp Feature: gene Location: 218863-219117 bp Ori: QAZ94460.1 Feature: domain Description: HHA Location: 218914-219097 bp Feature: domain Description: HHA Location: 2 18914-2 19097 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Cre_C (cd00799), RVT-GII, HHA (pfam05321)

Seq: CP034407.1 Klebsiella pneumoniae strain NH34 plasmid pNH34.2, complete sequence (103210 bp)
Overview 1 RT 1: 15958-19039 bp Neighborhood of RT #1 [15958, 19053] PRK10276 RVT-GII DUF1472 Feature: gene Location: 15958-16383 bp Ori: QAZ94567.1 Feature: domain Description: PRK10276 Location: 15961-16369 bp Feature: domain Description: PRK10276 Location: 15961-163 69 bp Feature: gene Location: 16538-16789 bp Feature: gene Location: 16789-18273 bp Ori: QAZ94569.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17191-17881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17191-17881 bp Feature: gene Location: 18507-18737 bp Feature: gene Location: 18961-19053 bp Feature: domain Description: DUF1472 Location: 18973-19039 bp Feature: domain Description: DUF1472 Location: 18973 -1903 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, DUF1472 (pfam07339)