myRT

myRT report for GCA_004135815.1_ASM413581v1

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Seq: CP034404.1 Escherichia coli strain CRE10 chromosome, complete genome (4931251 bp)
Overview 1 RT 1: 1439075-1445028 bp 2 RT 2: 3238840-3242569 bp 3 RT 3: 3972726-3976502 bp 4 RT 4: 4456782-4465716 bp Neighborhood of RT #1 [1439075, 1445204] AAA_15 RVT-Retrons Nuc_deoxyrib_tr Neighborhood of RT #2 [3238840, 3242571] InsE RVT-GII GIIM PHA02517 HTH_Tnp_1 Neighborhood of RT #3 [3972726, 3976502] InsE RVT-GII GIIM PHA02517 Neighborhood of RT #4 [4456782, 4465736] PRK09692 RVT-UG3 RVT-UG8 PRK09678 Psu Feature: gene Location: 1439075-1439305 bp Feature: gene Location: 1440218-1442464 bp Ori: QAZ86015.1 Feature: domain Description: AAA_15 Location: 1440221-1441229 bp Feature: domain Description: AAA_1 5 Location: 1 440221 -1 441 229 bp Feature: gene Location: 1442579-1443679 bp Ori: QAZ86016.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1442759-1443293 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 442759-1 443293 bp Feature: gene Location: 1444160-1444315 bp Feature: gene Location: 1444335-1445204 bp Ori: QAZ86017.1 Feature: domain Description: Nuc_deoxyrib_tr Location: 1444857-1445028 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 1 444857-1 445028 bp Feature: gene Location: 3238840-3239579 bp Feature: domain Description: InsE Location: 3238843-3239182 bp Feature: domain Description: InsE Location: 3238843-32391 82 bp Feature: gene Location: 3239572-3239943 bp Feature: gene Location: 3240252-3241760 bp Ori: QAZ89108.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3240510-3241242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 324051 0-3241 242 bp Feature: domain Description: GIIM Note: maturase Location: 3241317-3241515 bp Feature: domain Description: GIIM Note: maturase Location: 3241 31 7-3241 51 5 bp Feature: gene Location: 3241850-3242323 bp Feature: domain Description: PHA02517 Location: 3241856-3242321 bp Feature: domain Description: PHA0251 7 Location: 3241 856-3242321 bp Feature: gene Location: 3242368-3242571 bp Feature: domain Description: HTH_Tnp_1 Location: 3242377-3242569 bp Feature: domain Description: HTH_Tnp_1 Location: 3242377-3242569 bp Feature: gene Location: 3972726-3973413 bp Feature: domain Description: InsE Location: 3972735-3972984 bp Feature: domain Description: InsE Location: 3972735-3972984 bp Feature: gene Location: 3973409-3973777 bp Feature: gene Location: 3974086-3975594 bp Ori: QAZ89136.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3974344-3975076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3974344-3975076 bp Feature: domain Description: GIIM Note: maturase Location: 3975151-3975349 bp Feature: domain Description: GIIM Note: maturase Location: 39751 51 -3975349 bp Feature: gene Location: 3975675-3976162 bp Feature: domain Description: PHA02517 Location: 3975678-3975849 bp Feature: domain Description: PHA0251 7 Location: 3975678-3975849 bp Feature: gene Location: 3976245-3976502 bp Feature: gene Location: 4456782-4459484 bp Feature: gene Location: 4460077-4461255 bp Ori: QAZ88585.1 Feature: domain Description: PRK09692 Location: 4460083-4461241 bp Feature: domain Description: PRK09692 Location: 4460083-4461 241 bp Feature: gene Location: 4461257-4462453 bp Ori: QAZ88586.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 4461542-4462004 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 4461 542-4462004 bp Feature: gene Location: 4462457-4464459 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 4462952-4463399 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 4462952-4463399 bp Feature: gene Location: 4464908-4465180 bp Ori: QAZ88587.1 Feature: domain Description: PRK09678 Location: 4464917-4465085 bp Feature: domain Description: PRK09678 Location: 446491 7-4465085 bp Feature: gene Location: 4465182-4465736 bp Ori: QAZ88588.1 Feature: domain Description: Psu Location: 4465206-4465716 bp Feature: domain Description: Psu Location: 4465206-446571 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014), InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), HTH_Tnp_1 (pfam01527), PRK09692 (Integrase; provisional), RVT-UG3
RVT-UG8, PRK09678 (DNA-binding transcriptional regulator; Provisional), Psu (pfam07455)