myRT

myRT report for GCA_004141955.1_ASM414195v1

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Seq: CP035476.1 Escherichia coli strain U12A chromosome, complete genome (5018242 bp)
Overview 1 RT 1: 1344307-1350649 bp 2 RT 2: 4693489-4698808 bp Neighborhood of RT #1 [1344307, 1350649] PRK11388 RVT-Retrons Neighborhood of RT #2 [4693489, 4698834] YesM RVT-GII GIIM RVT-GII PFLE_PFLC Feature: gene Location: 1344307-1346226 bp Ori: QAY44092.1 Gene: dhaR Feature: domain Description: PRK11388 Location: 1344310-1346218 bp Feature: domain Description: PRK1 1 388 Location: 1 34431 0-1 34621 8 bp Feature: gene Location: 1346708-1346947 bp Feature: gene Location: 1347518-1349275 bp Ori: QAY44094.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1347662-1348280 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 347662-1 348280 bp Feature: gene Location: 1349297-1349464 bp Feature: gene Location: 1349522-1350649 bp Feature: gene Location: 4693489-4694718 bp Ori: QAY47200.1 Gene: ypdA_2 Feature: domain Description: YesM Location: 4693969-4694710 bp Feature: domain Description: YesM Location: 4693969-469471 0 bp Feature: gene Location: 4694791-4694979 bp Feature: gene Location: 4695301-4695783 bp Ori: QAY47202.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4695310-4695550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 469531 0-4695550 bp Feature: domain Description: GIIM Note: maturase Location: 4695598-4695778 bp Feature: domain Description: GIIM Note: maturase Location: 4695598-4695778 bp Feature: gene Location: 4695850-4696389 bp Ori: QAY47203.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4696180-4696258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46961 80-4696258 bp Feature: gene Location: 4696875-4697780 bp Feature: gene Location: 4697917-4698834 bp Ori: QAY47205.1 Gene: cutD_3 Feature: domain Description: PFLE_PFLC Location: 4697953-4698808 bp Feature: domain Description: PFLE_PFLC Location: 4697953-4698808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11388 (DNA-binding transcriptional regulator DhaR; Provisional), RVT-Retrons, YesM (COG2972), RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494)

Seq: CP035468.1 Escherichia coli strain U12A plasmid pU12A_A, complete sequence (151747 bp)
Overview 1 RT 1: 100777-104212 bp 2 RT 2: 115266-117615 bp Neighborhood of RT #1 [100777, 104277] InsE PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [115266, 117623] PHA02517 RVT-GII PRK10173 PRK10173 Feature: gene Location: 100777-101181 bp Ori: QAY42503.1 Feature: domain Description: InsE Location: 100807-101143 bp Feature: domain Description: InsE Location: 100807-101143 bp Feature: gene Location: 101210-101566 bp Ori: QAY42504.1 Feature: domain Description: PHA02517 Location: 101213-101522 bp Feature: domain Description: PHA02 517 Location: 1012 13-10152 2 bp Feature: gene Location: 101683-103206 bp Ori: QAY42505.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101956-102688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101956-102 688 bp Feature: domain Description: GIIM Note: maturase Location: 102763-102961 bp Feature: domain Description: GIIM Note: maturase Location: 102 763-102 961 bp Feature: gene Location: 103500-103871 bp Feature: gene Location: 103798-104277 bp Ori: QAY42507.1 Feature: domain Description: PHA02517 Location: 103858-104212 bp Feature: domain Description: PHA02 517 Location: 103858-1042 12 bp Feature: gene Location: 115266-115745 bp Ori: QAY42524.1 Feature: domain Description: PHA02517 Location: 115326-115680 bp Feature: domain Description: PHA02 517 Location: 11532 6-115680 bp Feature: gene Location: 115672-116043 bp Feature: gene Location: 116337-116840 bp Ori: QAY42526.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116610-116679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116610-116679 bp Feature: gene Location: 116879-117199 bp Ori: QAY42527.1 Gene: agp_1 Feature: domain Description: PRK10173 Location: 116882-117110 bp Feature: domain Description: PRK10173 Location: 116882 -117110 bp Feature: gene Location: 117174-117623 bp Ori: QAY42528.1 Gene: agp_2 Feature: domain Description: PRK10173 Location: 117177-117615 bp Feature: domain Description: PRK10173 Location: 117177-117615 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional)