myRT

myRT report for GCA_004194535.1_ASM419453v1

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Seq: CP025781.1 Iodobacter fluviatilis strain PCH194 chromosome, complete genome (4441511 bp)
Overview 1 RT 1: 34700-39814 bp 2 RT 2: 359645-364887 bp 3 RT 3: 697144-708524 bp 4 RT 4: 1412708-1416042 bp 5 RT 5: 2059724-2064235 bp 6 RT 6: 2100529-2111518 bp 7 RT 7: 2667203-2670579 bp 8 RT 8: 3184282-3192743 bp 9 RT 9: 3322145-3329915 bp 10 RT 10: 3844220-3859253 bp Neighborhood of RT #1 [34700, 40149] DUF3396 KOG1329 RVT-GII GIIM KOG1329 DUF4034 DUF4034 Neighborhood of RT #2 [359645, 364887] type_I_hlyD RVT-GII GIIM Neighborhood of RT #3 [697144, 708541] He_PIG He_PIG He_PIG Ig_Titin_like He_PIG He_PIG He_PIG RVT-GII GIIM PBP2_HisK GIIM RVT-GII GIIM META bioH Neighborhood of RT #4 [1412708, 1416107] InsE PHA02517 RVT-GII RVT-GII GIIM PHA02517 rve_2 Neighborhood of RT #5 [2059724, 2065445] PRK10574 PRK00032 RVT-GII GIIM COG4922 YtcJ Neighborhood of RT #6 [2100529, 2111523] DUF3108 PRK14901 PRK14901 RVT-GII GIIM RVT-GII GIIM PRK08317 RVT-GII GIIM BLUF PRK15036 Neighborhood of RT #7 [2667203, 2670602] rve_2 PHA02517 RVT-GII RVT-GII GIIM PHA02517 InsE Neighborhood of RT #8 [3184282, 3192743] Cyt_C5_DNA_methylase RE_HindVP RVT-GII GIIM RVT-GII GIIM Neighborhood of RT #9 [3322145, 3329917] RVT-GII GIIM flgB flgC Neighborhood of RT #10 [3844220, 3859258] RVT-GII GIIM RVT-GII GIIM Transposase_mut ChiC_BD RVT-GII GIIM Autotransporter Autotransporter PRK09077 Feature: gene Location: 34700-35923 bp Ori: QBC42128.1 Feature: domain Description: DUF3396 Location: 35048-35651 bp Feature: domain Description: DUF3396 Location: 35048-35651 bp Feature: gene Location: 36032-36364 bp Feature: domain Description: KOG1329 Location: 36056-36356 bp Feature: domain Description: KOG1 329 Location: 36056-36356 bp Feature: gene Location: 36655-37983 bp Ori: QBC42129.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36946-37603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36946-37603 bp Feature: domain Description: GIIM Note: maturase Location: 37675-37894 bp Feature: domain Description: GIIM Note: maturase Location: 37675-37894 bp Feature: gene Location: 38450-39019 bp Ori: QBC42130.1 Feature: domain Description: KOG1329 Location: 38489-38870 bp Feature: domain Description: KOG1 329 Location: 38489-38870 bp Feature: gene Location: 39124-40149 bp Ori: QBC42131.1 Feature: domain Description: DUF4034 Location: 39226-39553 bp Feature: domain Description: DUF4034 Location: 39226-39553 bp Feature: domain Description: DUF4034 Location: 39748-39814 bp Feature: domain Description: DUF4034 Location: 39748-3981 4 bp Feature: gene Location: 359645-361060 bp Ori: QBC42384.1 Feature: domain Description: type_I_hlyD Location: 359804-361058 bp Feature: domain Description: type_I_hlyD Location: 359804-361 058 bp Feature: gene Location: 361471-361989 bp Feature: gene Location: 362177-363505 bp Ori: QBC42386.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 362468-363125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 362468-3631 25 bp Feature: domain Description: GIIM Note: maturase Location: 363197-363416 bp Feature: domain Description: GIIM Note: maturase Location: 3631 97-36341 6 bp Feature: gene Location: 364023-364439 bp Feature: gene Location: 364540-364887 bp Feature: gene Location: 697144-697464 bp Feature: gene Location: 697636-699822 bp Ori: QBC42621.1 Feature: domain Description: He_PIG Location: 697843-697954 bp Feature: domain Description: He_PIG Location: 697843-697954 bp Feature: domain Description: He_PIG Location: 698125-698218 bp Feature: domain Description: He_PIG Location: 6981 25-69821 8 bp Feature: domain Description: He_PIG Location: 698392-698476 bp Feature: domain Description: He_PIG Location: 698392-698476 bp Feature: domain Description: Ig_Titin_like Location: 698494-698551 bp Feature: domain Description: Ig_Titin_like Location: 698494-698551 bp Feature: domain Description: He_PIG Location: 698677-698800 bp Feature: domain Description: He_PIG Location: 698677-698800 bp Feature: domain Description: He_PIG Location: 698953-699076 bp Feature: domain Description: He_PIG Location: 698953-699076 bp Feature: domain Description: He_PIG Location: 699301-699358 bp Feature: domain Description: He_PIG Location: 699301 -699358 bp Feature: gene Location: 699992-701320 bp Ori: QBC42622.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 700283-700940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 700283-700940 bp Feature: domain Description: GIIM Note: maturase Location: 701012-701231 bp Feature: domain Description: GIIM Note: maturase Location: 701 01 2-701 231 bp Feature: gene Location: 701888-702595 bp Ori: QBC42623.1 Feature: domain Description: PBP2_HisK Location: 701981-702587 bp Feature: domain Description: PBP2_HisK Location: 701 981 -702587 bp Feature: gene Location: 702848-703102 bp Ori: QBC42624.1 Feature: domain Description: GIIM Note: maturase Location: 702851-703016 bp Feature: domain Description: GIIM Note: maturase Location: 702851 -70301 6 bp Feature: gene Location: 703524-704678 bp Feature: gene Location: 705213-706541 bp Ori: QBC42626.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 705504-706161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 705504-7061 61 bp Feature: domain Description: GIIM Note: maturase Location: 706233-706452 bp Feature: domain Description: GIIM Note: maturase Location: 706233-706452 bp Feature: gene Location: 707267-707680 bp Ori: QBC42627.1 Feature: domain Description: META Location: 707360-707669 bp Feature: domain Description: META Location: 707360-707669 bp Feature: gene Location: 707762-708541 bp Ori: QBC42628.1 Gene: bioH Feature: domain Description: bioH Location: 707804-708524 bp Feature: domain Description: bioH Location: 707804-708524 bp Feature: gene Location: 1412708-1413001 bp Ori: QBC43191.1 Feature: domain Description: InsE Location: 1412720-1412978 bp Feature: domain Description: InsE Location: 1 41 2720-1 41 2978 bp Feature: gene Location: 1412998-1413420 bp Ori: QBC43192.1 Feature: domain Description: PHA02517 Location: 1413049-1413403 bp Feature: domain Description: PHA0251 7 Location: 1 41 3049-1 41 3403 bp Feature: gene Location: 1414070-1415425 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1414328-1414667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 4328-1 41 4667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1414853-1415060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 4853-1 41 5060 bp Feature: domain Description: GIIM Note: maturase Location: 1415132-1415342 bp Feature: domain Description: GIIM Note: maturase Location: 1 41 51 32-1 41 5342 bp Feature: gene Location: 1415698-1415910 bp Ori: QBC43193.1 Feature: domain Description: PHA02517 Location: 1415701-1415854 bp Feature: domain Description: PHA0251 7 Location: 1 41 5701 -1 41 5854 bp Feature: gene Location: 1415907-1416107 bp Ori: QBC43194.1 Feature: domain Description: rve_2 Location: 1415934-1416042 bp Feature: domain Description: rve_2 Location: 1 41 5934-1 41 6042 bp Feature: gene Location: 2059724-2060137 bp Ori: QBC43728.1 Feature: domain Description: PRK10574 Location: 2059736-2060111 bp Feature: domain Description: PRK1 0574 Location: 2059736-20601 1 1 bp Feature: gene Location: 2060567-2060989 bp Ori: QBC43729.1 Feature: domain Description: PRK00032 Location: 2060855-2060960 bp Feature: domain Description: PRK00032 Location: 2060855-2060960 bp Feature: gene Location: 2061205-2062533 bp Ori: QBC43730.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2061496-2062153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2061 496-20621 53 bp Feature: domain Description: GIIM Note: maturase Location: 2062225-2062444 bp Feature: domain Description: GIIM Note: maturase Location: 2062225-2062444 bp Feature: gene Location: 2062729-2063166 bp Ori: QBC43731.1 Feature: domain Description: COG4922 Location: 2062792-2063164 bp Feature: domain Description: COG4922 Location: 2062792-20631 64 bp Feature: gene Location: 2063617-2065445 bp Feature: domain Description: YtcJ Location: 2063704-2064235 bp Feature: domain Description: YtcJ Location: 2063704-2064235 bp Feature: gene Location: 2100529-2101683 bp Ori: QBC43766.1 Feature: domain Description: DUF3108 Location: 2101135-2101564 bp Feature: domain Description: DUF31 08 Location: 21 01 1 35-21 01 564 bp Feature: gene Location: 2101689-2102956 bp Feature: domain Description: PRK14901 Location: 2101761-2101887 bp Feature: domain Description: PRK1 4901 Location: 21 01 761 -21 01 887 bp Feature: domain Description: PRK14901 Location: 2102040-2102253 bp Feature: domain Description: PRK1 4901 Location: 21 02040-21 02253 bp Feature: gene Location: 2103739-2105067 bp Ori: QBC43767.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2104030-2104687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 04030-21 04687 bp Feature: domain Description: GIIM Note: maturase Location: 2104759-2104978 bp Feature: domain Description: GIIM Note: maturase Location: 21 04759-21 04978 bp Feature: gene Location: 2106199-2107527 bp Ori: QBC43768.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2106490-2107147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 06490-21 071 47 bp Feature: domain Description: GIIM Note: maturase Location: 2107219-2107438 bp Feature: domain Description: GIIM Note: maturase Location: 21 0721 9-21 07438 bp Feature: gene Location: 2107688-2108470 bp Ori: QBC43769.1 Feature: domain Description: PRK08317 Location: 2107754-2108468 bp Feature: domain Description: PRK0831 7 Location: 21 07754-21 08468 bp Feature: gene Location: 2109039-2110367 bp Ori: QBC43770.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2109330-2109987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 09330-21 09987 bp Feature: domain Description: GIIM Note: maturase Location: 2110059-2110278 bp Feature: domain Description: GIIM Note: maturase Location: 21 1 0059-21 1 0278 bp Feature: gene Location: 2110539-2110961 bp Ori: QBC43771.1 Feature: domain Description: BLUF Location: 2110542-2110815 bp Feature: domain Description: BLUF Location: 21 1 0542-21 1 081 5 bp Feature: gene Location: 2111113-2111523 bp Ori: QBC43772.1 Gene: uraH Feature: domain Description: PRK15036 Location: 2111128-2111518 bp Feature: domain Description: PRK1 5036 Location: 21 1 1 1 28-21 1 1 51 8 bp Feature: gene Location: 2667203-2667403 bp Ori: QBC44199.1 Feature: domain Description: rve_2 Location: 2667230-2667338 bp Feature: domain Description: rve_2 Location: 2667230-2667338 bp Feature: gene Location: 2667400-2667612 bp Ori: QBC44200.1 Feature: domain Description: PHA02517 Location: 2667403-2667556 bp Feature: domain Description: PHA0251 7 Location: 2667403-2667556 bp Feature: gene Location: 2667885-2669240 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2668143-2668482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26681 43-2668482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2668668-2668875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2668668-2668875 bp Feature: domain Description: GIIM Note: maturase Location: 2668947-2669157 bp Feature: domain Description: GIIM Note: maturase Location: 2668947-26691 57 bp Feature: gene Location: 2669890-2670312 bp Ori: QBC44201.1 Feature: domain Description: PHA02517 Location: 2669941-2670295 bp Feature: domain Description: PHA0251 7 Location: 2669941 -2670295 bp Feature: gene Location: 2670309-2670602 bp Ori: QBC44202.1 Feature: domain Description: InsE Location: 2670321-2670579 bp Feature: domain Description: InsE Location: 2670321 -2670579 bp Feature: gene Location: 3184282-3185178 bp Ori: QBC44588.1 Feature: domain Description: Cyt_C5_DNA_methylase Location: 3184285-3185155 bp Feature: domain Description: Cyt_C5_DNA_methylase Location: 31 84285-31 851 55 bp Feature: gene Location: 3185468-3186517 bp Ori: QBC44589.1 Feature: domain Description: RE_HindVP Location: 3185540-3186515 bp Feature: domain Description: RE_HindVP Location: 31 85540-31 8651 5 bp Feature: gene Location: 3187200-3188528 bp Ori: QBC44590.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3187491-3188148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 87491 -31 881 48 bp Feature: domain Description: GIIM Note: maturase Location: 3188220-3188439 bp Feature: domain Description: GIIM Note: maturase Location: 31 88220-31 88439 bp Feature: gene Location: 3189122-3190450 bp Ori: QBC44591.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3189413-3190070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 8941 3-31 90070 bp Feature: domain Description: GIIM Note: maturase Location: 3190142-3190361 bp Feature: domain Description: GIIM Note: maturase Location: 31 901 42-31 90361 bp Feature: gene Location: 3190625-3191359 bp Feature: gene Location: 3191349-3192743 bp Feature: gene Location: 3322145-3323041 bp Feature: gene Location: 3323408-3326188 bp Feature: gene Location: 3326874-3328202 bp Ori: QBC44699.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3327165-3327822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33271 65-3327822 bp Feature: domain Description: GIIM Note: maturase Location: 3327894-3328113 bp Feature: domain Description: GIIM Note: maturase Location: 3327894-33281 1 3 bp Feature: gene Location: 3329090-3329494 bp Ori: QBC44700.1 Gene: flgB Feature: domain Description: flgB Location: 3329093-3329489 bp Feature: domain Description: flgB Location: 3329093-3329489 bp Feature: gene Location: 3329507-3329917 bp Ori: QBC44701.1 Gene: flgC Feature: domain Description: flgC Location: 3329510-3329915 bp Feature: domain Description: flgC Location: 332951 0-332991 5 bp Feature: gene Location: 3844220-3844417 bp Feature: gene Location: 3844398-3844964 bp Feature: gene Location: 3845702-3847030 bp Ori: QBC45127.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3845993-3846650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3845993-3846650 bp Feature: domain Description: GIIM Note: maturase Location: 3846722-3846941 bp Feature: domain Description: GIIM Note: maturase Location: 3846722-3846941 bp Feature: gene Location: 3847283-3847819 bp Feature: gene Location: 3848362-3849690 bp Ori: QBC45129.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3848653-3849310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3848653-384931 0 bp Feature: domain Description: GIIM Note: maturase Location: 3849382-3849601 bp Feature: domain Description: GIIM Note: maturase Location: 3849382-3849601 bp Feature: gene Location: 3849882-3850112 bp Feature: gene Location: 3850506-3850886 bp Feature: gene Location: 3851359-3851574 bp Ori: QBC45132.1 Feature: domain Description: Transposase_mut Location: 3851377-3851572 bp Feature: domain Description: Transposase_mut Location: 3851 377-3851 572 bp Feature: gene Location: 3852329-3854044 bp Feature: domain Description: ChiC_BD Location: 3853940-3854042 bp Feature: domain Description: ChiC_BD Location: 3853940-3854042 bp Feature: gene Location: 3854872-3856200 bp Ori: QBC45133.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3855163-3855820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38551 63-3855820 bp Feature: domain Description: GIIM Note: maturase Location: 3855892-3856111 bp Feature: domain Description: GIIM Note: maturase Location: 3855892-38561 1 1 bp Feature: gene Location: 3856556-3857419 bp Ori: QBC45783.1 Feature: domain Description: Autotransporter Location: 3856688-3856925 bp Feature: domain Description: Autotransporter Location: 3856688-3856925 bp Feature: domain Description: Autotransporter Location: 3856994-3857321 bp Feature: domain Description: Autotransporter Location: 3856994-3857321 bp Feature: gene Location: 3857675-3859258 bp Ori: QBC45134.1 Feature: domain Description: PRK09077 Location: 3857684-3859253 bp Feature: domain Description: PRK09077 Location: 3857684-3859253 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3396 (pfam11876), KOG1329 (KOG1329, Phospholipase D1 ), RVT-GII, GIIM (pfam08388), DUF4034 (pfam13226), type_I_hlyD (TIGR01843), He_PIG (pfam05345), Ig_Titin_like (cd05748), PBP2_HisK (cd13704), META (pfam03724)
bioH (TIGR01738), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), rve_2 (pfam13333), PRK10574 (putative major pilin subunit; Provisional), PRK00032 (septum formation inhibitor Maf), COG4922 (Predicted SnoaL-like aldol condensation-catalyzing enzyme ), YtcJ (COG1574), DUF3108 (pfam11306), PRK14901 (16S rRNA methyltransferase B; Provisional)
PRK08317 (hypothetical protein; Provisional), BLUF (smart01034), PRK15036 (hydroxyisourate hydrolase; Provisional), Cyt_C5_DNA_methylase (cl30459), RE_HindVP (pfam09519), flgB (PRK12685), flgC (PRK12782), Transposase_mut (pfam00872), ChiC_BD (cd12215), Autotransporter (smart00869)
PRK09077 (L-aspartate oxidase; Provisional)