myRT

myRT report for GCA_004208415.1_ASM420841v1

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Seq: CP035758.1 Ktedonobacterales bacterium SCAWS-G2 chromosome, complete genome (11340617 bp)
Overview 1 RT 1: 3654297-3659680 bp 2 RT 2: 4249019-4259464 bp 3 RT 3: 4837495-4844576 bp 4 RT 4: 5376285-5381274 bp 5 RT 5: 7675399-7680719 bp 6 RT 6: 9593432-9599586 bp 7 RT 7: 9608539-9614865 bp Neighborhood of RT #1 [3654297, 3659703] HTH_32 Phage_integrase RVT-GII Intron_maturas2 HNHc InsQ COG2452 Neighborhood of RT #2 [4249019, 4259508] SWIM RVT_N RVT-GII GIIM HNH RRXRR HNHc RVT_N RVT-GII GIIM HNHc PRK12677 Tas Neighborhood of RT #3 [4837495, 4844576] ST1585-like_MBL-fold RVT-GII GIIM HNH RVT-GII RVT_N RVT-GII Neighborhood of RT #4 [5376285, 5381312] DZR Tnp_DNA_bind RVT-GII Intron_maturas2 HTH_MerR-trunc Neighborhood of RT #5 [7675399, 7680943] CxxC_CxxC_SSSS RVT-GII Intron_maturas2 BcsQ nucleoid_noc nucleoid_noc Neighborhood of RT #6 [9593432, 9599597] RpoE NagC RVT-GII Intron_maturas2 HNHc PtsH ManX Neighborhood of RT #7 [9608539, 9614865] RVT-GII Intron_maturas2 HNHc pcm Feature: gene Location: 3654297-3654599 bp Ori: QBD77464.1 Feature: domain Description: HTH_32 Location: 3654366-3654564 bp Feature: domain Description: HTH_32 Location: 3654366-3654564 bp Feature: gene Location: 3654894-3655406 bp Ori: QBD77465.1 Feature: domain Description: Phage_integrase Location: 3655038-3655332 bp Feature: domain Description: Phage_integrase Location: 3655038-3655332 bp Feature: gene Location: 3655419-3657239 bp Ori: QBD83491.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3655644-3656442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3655644-3656442 bp Feature: domain Description: Intron_maturas2 Location: 3656598-3656805 bp Feature: domain Description: Intron_maturas2 Location: 3656598-3656805 bp Feature: domain Description: HNHc Note: nucleases Location: 3656988-3657135 bp Feature: domain Description: HNHc Note: nucleases Location: 3656988-36571 35 bp Feature: gene Location: 3657893-3659128 bp Feature: domain Description: InsQ Location: 3657956-3659069 bp Feature: domain Description: InsQ Location: 3657956-3659069 bp Feature: gene Location: 3659128-3659703 bp Feature: domain Description: COG2452 Location: 3659131-3659680 bp Feature: domain Description: COG2452 Location: 36591 31 -3659680 bp Feature: gene Location: 4249019-4250356 bp Ori: QBD77921.1 Feature: domain Description: SWIM Location: 4249169-4249259 bp Feature: domain Description: SWIM Location: 42491 69-4249259 bp Feature: gene Location: 4250569-4251012 bp Feature: gene Location: 4251003-4252802 bp Ori: QBD77923.1 Gene: ltrA Feature: domain Description: RVT_N Location: 4251063-4251309 bp Feature: domain Description: RVT_N Location: 4251 063-4251 309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4251363-4252011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4251 363-425201 1 bp Feature: domain Description: GIIM Note: maturase Location: 4252134-4252347 bp Feature: domain Description: GIIM Note: maturase Location: 42521 34-4252347 bp Feature: domain Description: HNH Note: nucleases Location: 4252557-4252692 bp Feature: domain Description: HNH Note: nucleases Location: 4252557-4252692 bp Feature: gene Location: 4253366-4254235 bp Ori: QBD77924.1 Feature: domain Description: RRXRR Location: 4253375-4253888 bp Feature: domain Description: RRXRR Location: 4253375-4253888 bp Feature: domain Description: HNHc Note: nucleases Location: 4253909-4254062 bp Feature: domain Description: HNHc Note: nucleases Location: 4253909-4254062 bp Feature: gene Location: 4254350-4256140 bp Ori: QBD77925.1 Gene: ltrA Feature: domain Description: RVT_N Location: 4254374-4254614 bp Feature: domain Description: RVT_N Location: 4254374-425461 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4254662-4255334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4254662-4255334 bp Feature: domain Description: GIIM Note: maturase Location: 4255439-4255673 bp Feature: domain Description: GIIM Note: maturase Location: 4255439-4255673 bp Feature: domain Description: HNHc Note: nucleases Location: 4255850-4256003 bp Feature: domain Description: HNHc Note: nucleases Location: 4255850-4256003 bp Feature: gene Location: 4256846-4258051 bp Ori: QBD77926.1 Feature: domain Description: PRK12677 Location: 4256900-4258043 bp Feature: domain Description: PRK1 2677 Location: 4256900-4258043 bp Feature: gene Location: 4258495-4259508 bp Ori: QBD77927.1 Feature: domain Description: Tas Location: 4258498-4259464 bp Feature: domain Description: Tas Location: 4258498-4259464 bp Feature: gene Location: 4837495-4838448 bp Ori: QBD78369.1 Feature: domain Description: ST1585-like_MBL-fold Location: 4837549-4838185 bp Feature: domain Description: ST1 585-like_MBL-fold Location: 4837549-48381 85 bp Feature: gene Location: 4838563-4839012 bp Feature: gene Location: 4838996-4840369 bp Ori: QBD78371.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4839131-4839578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48391 31 -4839578 bp Feature: domain Description: GIIM Note: maturase Location: 4839701-4839914 bp Feature: domain Description: GIIM Note: maturase Location: 4839701 -483991 4 bp Feature: domain Description: HNH Note: nucleases Location: 4840124-4840259 bp Feature: domain Description: HNH Note: nucleases Location: 48401 24-4840259 bp Feature: gene Location: 4840335-4842124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4840599-4840710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4840599-484071 0 bp Feature: gene Location: 4842601-4843191 bp Ori: QBD78372.1 Feature: domain Description: RVT_N Location: 4842625-4842865 bp Feature: domain Description: RVT_N Location: 4842625-4842865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4842913-4843180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 484291 3-48431 80 bp Feature: gene Location: 4843683-4843907 bp Feature: gene Location: 4844340-4844576 bp Feature: gene Location: 5376285-5376965 bp Ori: QBD78785.1 Feature: domain Description: DZR Location: 5376804-5376942 bp Feature: domain Description: DZR Location: 5376804-5376942 bp Feature: gene Location: 5377097-5378477 bp Feature: domain Description: Tnp_DNA_bind Location: 5377133-5377286 bp Feature: domain Description: Tnp_DNA_bind Location: 53771 33-5377286 bp Feature: gene Location: 5379118-5380707 bp Ori: QBD78786.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5379511-5380264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 537951 1 -5380264 bp Feature: domain Description: Intron_maturas2 Location: 5380369-5380606 bp Feature: domain Description: Intron_maturas2 Location: 5380369-5380606 bp Feature: gene Location: 5381109-5381312 bp Ori: QBD78787.1 Feature: domain Description: HTH_MerR-trunc Location: 5381124-5381274 bp Feature: domain Description: HTH_MerR-trunc Location: 5381 1 24-5381 274 bp Feature: gene Location: 7675399-7675632 bp Ori: QBD80600.1 Feature: domain Description: CxxC_CxxC_SSSS Location: 7675402-7675549 bp Feature: domain Description: CxxC_CxxC_SSSS Location: 7675402-7675549 bp Feature: gene Location: 7675966-7676475 bp Feature: gene Location: 7677385-7679223 bp Ori: QBD80602.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7677670-7678450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7677670-7678450 bp Feature: domain Description: Intron_maturas2 Location: 7678588-7678819 bp Feature: domain Description: Intron_maturas2 Location: 7678588-767881 9 bp Feature: gene Location: 7679332-7680087 bp Ori: QBD80603.1 Feature: domain Description: BcsQ Location: 7679365-7680082 bp Feature: domain Description: BcsQ Location: 7679365-7680082 bp Feature: gene Location: 7680080-7680943 bp Ori: QBD80604.1 Feature: domain Description: nucleoid_noc Location: 7680194-7680332 bp Feature: domain Description: nucleoid_noc Location: 76801 94-7680332 bp Feature: domain Description: nucleoid_noc Location: 7680440-7680719 bp Feature: domain Description: nucleoid_noc Location: 7680440-768071 9 bp Feature: gene Location: 9593432-9594100 bp Ori: QBD82060.1 Feature: domain Description: RpoE Location: 9593588-9593909 bp Feature: domain Description: RpoE Location: 9593588-9593909 bp Feature: gene Location: 9594596-9595579 bp Ori: QBD82061.1 Feature: domain Description: NagC Location: 9594617-9595502 bp Feature: domain Description: NagC Location: 959461 7-9595502 bp Feature: gene Location: 9595765-9597672 bp Ori: QBD83740.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9595990-9596788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9595990-9596788 bp Feature: domain Description: Intron_maturas2 Location: 9596944-9597151 bp Feature: domain Description: Intron_maturas2 Location: 9596944-95971 51 bp Feature: domain Description: HNHc Note: nucleases Location: 9597334-9597481 bp Feature: domain Description: HNHc Note: nucleases Location: 9597334-9597481 bp Feature: gene Location: 9598733-9598993 bp Ori: QBD83741.1 Feature: domain Description: PtsH Location: 9598739-9598985 bp Feature: domain Description: PtsH Location: 9598739-9598985 bp Feature: gene Location: 9599199-9599597 bp Ori: QBD82062.1 Feature: domain Description: ManX Location: 9599205-9599586 bp Feature: domain Description: ManX Location: 9599205-9599586 bp Feature: gene Location: 9608539-9608877 bp Feature: gene Location: 9609845-9610324 bp Feature: gene Location: 9610359-9612359 bp Ori: QBD82072.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9610641-9611451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 961 0641 -961 1 451 bp Feature: domain Description: Intron_maturas2 Location: 9611550-9611805 bp Feature: domain Description: Intron_maturas2 Location: 961 1 550-961 1 805 bp Feature: domain Description: HNHc Note: nucleases Location: 9611985-9612138 bp Feature: domain Description: HNHc Note: nucleases Location: 961 1 985-961 21 38 bp Feature: gene Location: 9613483-9614139 bp Ori: QBD82073.1 Feature: domain Description: pcm Location: 9613507-9614113 bp Feature: domain Description: pcm Location: 961 3507-961 41 1 3 bp Feature: gene Location: 9614347-9614865 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_32 (pfam13565), Phage_integrase (pfam00589), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), InsQ (COG0675), COG2452 (Predicted site-specific integrase-resolvase ), SWIM (pfam04434), RVT_N (pfam13655), GIIM (pfam08388)
HNH (pfam01844), RRXRR (pfam14239), PRK12677 (xylose isomerase; Provisional), Tas (COG0667), ST1585-like_MBL-fold (cd07726), DZR (pfam12773), Tnp_DNA_bind (pfam14706), HTH_MerR-trunc (cd04762), CxxC_CxxC_SSSS (TIGR02605), BcsQ (COG1192)
nucleoid_noc (TIGR04285), RpoE (COG3343), NagC (COG1940), PtsH (COG1925), ManX (COG2893), pcm (PRK00312)