myRT

myRT report for GCA_004208615.1_ASM420861v1

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Seq: CP035790.1 Lactobacillus reuteri strain ATG-F4 chromosome, complete genome (2041516 bp)
Overview 1 RT 1: 98277-103112 bp 2 RT 2: 123668-129174 bp 3 RT 3: 180475-183330 bp 4 RT 4: 286113-290561 bp 5 RT 5: 435278-441986 bp 6 RT 6: 532661-540739 bp 7 RT 7: 615442-623771 bp 8 RT 8: 1247817-1253145 bp 9 RT 9: 1399018-1404411 bp 10 RT 10: 1416841-1422021 bp 11 RT 11: 1693075-1697788 bp 12 RT 12: 1895303-1899521 bp Neighborhood of RT #1 [98277, 103114] DUF915 Acetyltransf_1 RVT-GII GIIM PRK05313 Neighborhood of RT #2 [123668, 129245] Endonuclease_NS PLDc_Bfil_DEXD_like ABC_PhnC_transporter RVT-GII GIIM DUF454 Neighborhood of RT #3 [180475, 183330] COG3464 DDE_Tnp_ISL3 RVT-GII GIIM Neighborhood of RT #4 [286113, 290569] PRK10703 PBP1_GalR RVT-GII GIIM Ape1-like_AP-endo Neighborhood of RT #5 [435278, 441991] Tas GT4_GtfA-like RVT-GII GIIM Mub_B2 Mub_B2 PT Gram_pos_anchor Neighborhood of RT #6 [532661, 540798] KxYKxGKxW COG5263 COG5263 COG5263 glucan_65_rpt Glyco_hydro_70 COG5263 Spr RVT-GII GIIM RAYT Neighborhood of RT #7 [615442, 623857] ZntA YjhB RVT-GII GIIM nicotinamidase_related hsdR HsdR Neighborhood of RT #8 [1247817, 1253524] ApbE RVT-GII GIIM YSIRK_signal Tra8 Neighborhood of RT #9 [1399018, 1404416] pyrG RVT-GII GIIM PRK12830 rpmE2 Neighborhood of RT #10 [1416841, 1422029] Glutaminase RAYT RVT-GII GIIM LTA_DltD PRK05087 Neighborhood of RT #11 [1693075, 1697790] oxalate_frc RVT-GII GIIM AzgA rpsD Neighborhood of RT #12 [1895303, 1899532] frr RVT-GII GIIM RAYT PRK14830 Feature: gene Location: 98277-99122 bp Ori: QBE45584.1 Feature: domain Description: DUF915 Location: 98376-99120 bp Feature: domain Description: DUF91 5 Location: 98376-991 20 bp Feature: gene Location: 99261-99806 bp Ori: QBE45585.1 Feature: domain Description: Acetyltransf_1 Location: 99402-99729 bp Feature: domain Description: Acetyltransf_1 Location: 99402-99729 bp Feature: gene Location: 99894-101276 bp Ori: QBE45586.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100212-100830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0021 2-1 00830 bp Feature: domain Description: GIIM Note: maturase Location: 100884-101112 bp Feature: domain Description: GIIM Note: maturase Location: 1 00884-1 01 1 1 2 bp Feature: gene Location: 101319-101465 bp Feature: gene Location: 101771-103114 bp Ori: QBE45587.1 Feature: domain Description: PRK05313 Location: 101774-103112 bp Feature: domain Description: PRK0531 3 Location: 1 01 774-1 031 1 2 bp Feature: gene Location: 123668-124522 bp Ori: QBE45608.1 Feature: domain Description: Endonuclease_NS Location: 123953-124454 bp Feature: domain Description: Endonuclease_NS Location: 1 23953-1 24454 bp Feature: gene Location: 124701-127025 bp Ori: QBE45609.1 Feature: domain Description: PLDc_Bfil_DEXD_like Location: 124770-125196 bp Feature: domain Description: PLDc_Bfil_DEXD_like Location: 1 24770-1 251 96 bp Feature: domain Description: ABC_PhnC_transporter Location: 126003-126084 bp Feature: domain Description: ABC_PhnC_transporter Location: 1 26003-1 26084 bp Feature: gene Location: 127109-128491 bp Ori: QBE45610.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127427-128045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 27427-1 28045 bp Feature: domain Description: GIIM Note: maturase Location: 128099-128327 bp Feature: domain Description: GIIM Note: maturase Location: 1 28099-1 28327 bp Feature: gene Location: 128534-128680 bp Feature: gene Location: 128976-129245 bp Ori: QBE45611.1 Feature: domain Description: DUF454 Location: 129003-129174 bp Feature: domain Description: DUF454 Location: 1 29003-1 291 74 bp Feature: gene Location: 180475-181527 bp Feature: domain Description: COG3464 Location: 180532-181522 bp Feature: domain Description: COG3464 Location: 1 80532-1 81 522 bp Feature: gene Location: 181573-181776 bp Ori: QBE45663.1 Feature: domain Description: DDE_Tnp_ISL3 Location: 181579-181711 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 1 81 579-1 81 71 1 bp Feature: gene Location: 181759-183141 bp Ori: QBE45664.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182077-182695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 82077-1 82695 bp Feature: domain Description: GIIM Note: maturase Location: 182749-182977 bp Feature: domain Description: GIIM Note: maturase Location: 1 82749-1 82977 bp Feature: gene Location: 183184-183330 bp Feature: gene Location: 286113-287135 bp Ori: QBE45738.1 Feature: domain Description: PRK10703 Location: 286119-286257 bp Feature: domain Description: PRK1 0703 Location: 2861 1 9-286257 bp Feature: domain Description: PBP1_GalR Location: 286308-287115 bp Feature: domain Description: PBP1 _GalR Location: 286308-2871 1 5 bp Feature: gene Location: 287301-287780 bp Feature: gene Location: 287864-289246 bp Ori: QBE45740.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 288182-288800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2881 82-288800 bp Feature: domain Description: GIIM Note: maturase Location: 288854-289082 bp Feature: domain Description: GIIM Note: maturase Location: 288854-289082 bp Feature: gene Location: 289289-289435 bp Feature: gene Location: 289742-290569 bp Ori: QBE45741.1 Gene: xth Feature: domain Description: Ape1-like_AP-endo Location: 289745-290561 bp Feature: domain Description: Ape1 -like_AP-endo Location: 289745-290561 bp Feature: gene Location: 435278-436258 bp Ori: QBE47386.1 Feature: domain Description: Tas Location: 435290-436211 bp Feature: domain Description: Tas Location: 435290-43621 1 bp Feature: gene Location: 436297-437799 bp Ori: QBE45907.1 Feature: domain Description: GT4_GtfA-like Location: 436306-437767 bp Feature: domain Description: GT4_GtfA-like Location: 436306-437767 bp Feature: gene Location: 437864-439246 bp Ori: QBE45908.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 438182-438800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4381 82-438800 bp Feature: domain Description: GIIM Note: maturase Location: 438854-439082 bp Feature: domain Description: GIIM Note: maturase Location: 438854-439082 bp Feature: gene Location: 439289-439435 bp Feature: gene Location: 439754-441991 bp Ori: QBE45909.1 Feature: domain Description: Mub_B2 Location: 439904-440123 bp Feature: domain Description: Mub_B2 Location: 439904-4401 23 bp Feature: domain Description: Mub_B2 Location: 440678-440912 bp Feature: domain Description: Mub_B2 Location: 440678-44091 2 bp Feature: domain Description: PT Location: 441650-441728 bp Feature: domain Description: PT Location: 441 650-441 728 bp Feature: domain Description: Gram_pos_anchor Location: 441866-441986 bp Feature: domain Description: Gram_pos_anchor Location: 441 866-441 986 bp Feature: gene Location: 532661-537127 bp Ori: QBE45990.1 Feature: domain Description: KxYKxGKxW Location: 532673-532736 bp Feature: domain Description: KxYKxGKxW Location: 532673-532736 bp Feature: domain Description: COG5263 Location: 532820-533411 bp Feature: domain Description: COG5263 Location: 532820-53341 1 bp Feature: domain Description: COG5263 Location: 533450-533804 bp Feature: domain Description: COG5263 Location: 533450-533804 bp Feature: domain Description: COG5263 Location: 533825-534257 bp Feature: domain Description: COG5263 Location: 533825-534257 bp Feature: domain Description: glucan_65_rpt Location: 534365-534446 bp Feature: domain Description: glucan_65_rpt Location: 534365-534446 bp Feature: domain Description: Glyco_hydro_70 Location: 534689-537059 bp Feature: domain Description: Glyco_hydro_70 Location: 534689-537059 bp Feature: gene Location: 537283-538164 bp Ori: QBE45991.1 Feature: domain Description: COG5263 Location: 537409-537808 bp Feature: domain Description: COG5263 Location: 537409-537808 bp Feature: domain Description: Spr Location: 537835-538126 bp Feature: domain Description: Spr Location: 537835-5381 26 bp Feature: gene Location: 538315-539688 bp Ori: QBE45992.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 538633-539251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 538633-539251 bp Feature: domain Description: GIIM Note: maturase Location: 539305-539533 bp Feature: domain Description: GIIM Note: maturase Location: 539305-539533 bp Feature: gene Location: 539731-539877 bp Feature: gene Location: 540340-540798 bp Ori: QBE45993.1 Gene: tnpA Feature: domain Description: RAYT Location: 540358-540739 bp Feature: domain Description: RAYT Location: 540358-540739 bp Feature: gene Location: 615442-617297 bp Feature: domain Description: ZntA Location: 615487-616642 bp Feature: domain Description: ZntA Location: 61 5487-61 6642 bp Feature: gene Location: 617507-617839 bp Ori: QBE46061.1 Feature: domain Description: YjhB Location: 617567-617804 bp Feature: domain Description: YjhB Location: 61 7567-61 7804 bp Feature: gene Location: 617897-619279 bp Ori: QBE46062.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 618215-618833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 821 5-61 8833 bp Feature: domain Description: GIIM Note: maturase Location: 618887-619115 bp Feature: domain Description: GIIM Note: maturase Location: 61 8887-61 91 1 5 bp Feature: gene Location: 619802-620296 bp Ori: QBE46063.1 Feature: domain Description: nicotinamidase_related Location: 619817-620255 bp Feature: domain Description: nicotinamidase_related Location: 61 981 7-620255 bp Feature: gene Location: 620522-623857 bp Ori: QBE46064.1 Feature: domain Description: hsdR Location: 620537-620888 bp Feature: domain Description: hsdR Location: 620537-620888 bp Feature: domain Description: HsdR Location: 621110-623771 bp Feature: domain Description: HsdR Location: 621 1 1 0-623771 bp Feature: gene Location: 1247817-1248743 bp Ori: QBE46647.1 Feature: domain Description: ApbE Location: 1247841-1248720 bp Feature: domain Description: ApbE Location: 1 247841 -1 248720 bp Feature: gene Location: 1249052-1249198 bp Feature: gene Location: 1249241-1250623 bp Ori: QBE46648.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1249559-1250177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 249559-1 2501 77 bp Feature: domain Description: GIIM Note: maturase Location: 1250231-1250459 bp Feature: domain Description: GIIM Note: maturase Location: 1 250231 -1 250459 bp Feature: gene Location: 1250888-1252711 bp Ori: QBE46649.1 Feature: domain Description: YSIRK_signal Location: 1250924-1251026 bp Feature: domain Description: YSIRK_signal Location: 1 250924-1 251 026 bp Feature: gene Location: 1252788-1253524 bp Feature: domain Description: Tra8 Location: 1252791-1253145 bp Feature: domain Description: Tra8 Location: 1 252791 -1 2531 45 bp Feature: gene Location: 1399018-1400622 bp Ori: QBE46773.1 Feature: domain Description: pyrG Location: 1399021-1400617 bp Feature: domain Description: pyrG Location: 1 399021 -1 40061 7 bp Feature: gene Location: 1400946-1401092 bp Feature: gene Location: 1401135-1402517 bp Ori: QBE46774.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1401453-1402071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 401 453-1 402071 bp Feature: domain Description: GIIM Note: maturase Location: 1402125-1402353 bp Feature: domain Description: GIIM Note: maturase Location: 1 4021 25-1 402353 bp Feature: gene Location: 1402801-1404078 bp Ori: QBE46775.1 Feature: domain Description: PRK12830 Location: 1402804-1404052 bp Feature: domain Description: PRK1 2830 Location: 1 402804-1 404052 bp Feature: gene Location: 1404171-1404416 bp Ori: QBE46776.1 Feature: domain Description: rpmE2 Location: 1404174-1404411 bp Feature: domain Description: rpmE2 Location: 1 4041 74-1 40441 1 bp Feature: gene Location: 1416841-1417782 bp Ori: QBE46790.1 Feature: domain Description: Glutaminase Location: 1416922-1417774 bp Feature: domain Description: Glutaminase Location: 1 41 6922-1 41 7774 bp Feature: gene Location: 1417928-1418386 bp Ori: QBE46791.1 Gene: tnpA Feature: domain Description: RAYT Location: 1417946-1418327 bp Feature: domain Description: RAYT Location: 1 41 7946-1 41 8327 bp Feature: gene Location: 1419042-1420424 bp Ori: QBE46792.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1419360-1419975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 9360-1 41 9975 bp Feature: domain Description: GIIM Note: maturase Location: 1420032-1420260 bp Feature: domain Description: GIIM Note: maturase Location: 1 420032-1 420260 bp Feature: gene Location: 1420508-1421797 bp Ori: QBE46793.1 Gene: dltD Feature: domain Description: LTA_DltD Location: 1420541-1421678 bp Feature: domain Description: LTA_DltD Location: 1 420541 -1 421 678 bp Feature: gene Location: 1421790-1422029 bp Ori: QBE46794.1 Gene: dltC Feature: domain Description: PRK05087 Location: 1421793-1422021 bp Feature: domain Description: PRK05087 Location: 1 421 793-1 422021 bp Feature: gene Location: 1693075-1693581 bp Feature: domain Description: oxalate_frc Location: 1693078-1693531 bp Feature: domain Description: oxalate_frc Location: 1 693078-1 693531 bp Feature: gene Location: 1693899-1694045 bp Feature: gene Location: 1694088-1695470 bp Ori: QBE47041.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1694406-1695024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 694406-1 695024 bp Feature: domain Description: GIIM Note: maturase Location: 1695078-1695306 bp Feature: domain Description: GIIM Note: maturase Location: 1 695078-1 695306 bp Feature: gene Location: 1695719-1697053 bp Ori: QBE47042.1 Feature: domain Description: AzgA Location: 1695746-1697030 bp Feature: domain Description: AzgA Location: 1 695746-1 697030 bp Feature: gene Location: 1697185-1697790 bp Ori: QBE47043.1 Feature: domain Description: rpsD Location: 1697188-1697788 bp Feature: domain Description: rpsD Location: 1 6971 88-1 697788 bp Feature: gene Location: 1895303-1895866 bp Ori: QBE47228.1 Feature: domain Description: frr Location: 1895318-1895861 bp Feature: domain Description: frr Location: 1 89531 8-1 895861 bp Feature: gene Location: 1896173-1896319 bp Feature: gene Location: 1896362-1897744 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1896680-1897298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 896680-1 897298 bp Feature: domain Description: GIIM Note: maturase Location: 1897352-1897580 bp Feature: domain Description: GIIM Note: maturase Location: 1 897352-1 897580 bp Feature: gene Location: 1897993-1898451 bp Ori: QBE47229.1 Gene: tnpA Feature: domain Description: RAYT Location: 1898011-1898392 bp Feature: domain Description: RAYT Location: 1 89801 1 -1 898392 bp Feature: gene Location: 1898753-1899532 bp Ori: QBE47415.1 Feature: domain Description: PRK14830 Location: 1898774-1899521 bp Feature: domain Description: PRK1 4830 Location: 1 898774-1 899521 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF915 (pfam06028), Acetyltransf_1 (pfam00583), RVT-GII, GIIM (pfam08388), PRK05313 (hypothetical protein; Provisional), Endonuclease_NS (smart00892), PLDc_Bfil_DEXD_like (cd09117), ABC_PhnC_transporter (cd03256), DUF454 (pfam04304), COG3464 (Transposase )
DDE_Tnp_ISL3 (pfam01610), PRK10703 (HTH-type transcriptional repressor PurR), PBP1_GalR (cd01544), Ape1-like_AP-endo (cd09087), Tas (COG0667), GT4_GtfA-like (cd04949), Mub_B2 (pfam17966), PT (pfam04886), Gram_pos_anchor (pfam00746), KxYKxGKxW (TIGR03715)
COG5263 (Glucan-binding domain (YG repeat) ), glucan_65_rpt (TIGR04035), Glyco_hydro_70 (pfam02324), Spr (COG0791), RAYT (COG1943), ZntA (COG2217), YjhB (COG1051), nicotinamidase_related (cd01014), hsdR (TIGR00348), HsdR (COG4096)
ApbE (pfam02424), YSIRK_signal (TIGR01168), Tra8 (COG2826), pyrG (PRK05380), PRK12830 (UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed), rpmE2 (PRK01678), Glutaminase (pfam04960), LTA_DltD (TIGR04092), PRK05087 (D-alanine--poly(phosphoribitol) ligase subunit DltC), oxalate_frc (TIGR03253)
AzgA (COG2252), rpsD (PRK05327), frr (TIGR00496), PRK14830 (undecaprenyl pyrophosphate synthase; Provisional)