myRT

myRT report for GCA_004209795.1_ASM420979v1

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Seq: CP035907.1 Klebsiella pneumoniae strain BA4656 plasmid pIncFIBpQil, complete sequence (164210 bp)
Overview 1 RT 1: 9425-14060 bp Neighborhood of RT #1 [9425, 14060] PRK15417 Arr-ms RVT-GII GIIM N6_acetyl_AAC6 Feature: gene Location: 9425-10438 bp Ori: QBE75446.1 Gene: intI1 Feature: domain Description: PRK15417 Location: 9428-10436 bp Feature: domain Description: PRK1 541 7 Location: 9428-1 0436 bp Feature: gene Location: 10611-11063 bp Ori: QBE75447.1 Feature: domain Description: Arr-ms Location: 10671-10977 bp Feature: domain Description: Arr-ms Location: 1 0671 -1 0977 bp Feature: gene Location: 11144-12397 bp Ori: QBE75573.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11336-11960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 336-1 1 960 bp Feature: domain Description: GIIM Note: maturase Location: 11999-12218 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 999-1 221 8 bp Feature: gene Location: 13118-13672 bp Ori: QBE75448.1 Gene: aac(6')-Ib Feature: domain Description: N6_acetyl_AAC6 Location: 13124-13670 bp Feature: domain Description: N6_acetyl_AAC6 Location: 1 31 24-1 3670 bp Feature: gene Location: 13902-14060 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15417 (integron integrase), Arr-ms (pfam12120), RVT-GII, GIIM (pfam08388), N6_acetyl_AAC6 (TIGR04431)

Seq: CP035905.1 Klebsiella pneumoniae strain BA4656 chromosome, complete genome (5432984 bp)
Overview 1 RT 1: 12660-19445 bp 2 RT 2: 1390726-1395520 bp 3 RT 3: 2519287-2524759 bp 4 RT 4: 3351503-3355671 bp Neighborhood of RT #1 [12660, 19483] AAA_15 RVT-Retrons YjgH_like HTH_1 PBP2_CrgA_like_3 Neighborhood of RT #2 [1390726, 1395522] PRK05086 PRK05066 RVT-GII GIIM DUF1471 DUF1471 Neighborhood of RT #3 [2519287, 2524773] HTH_XRE HTH_XRE RVT-UG2 traC_PFL_4706 conj_conj_conj_TIGR03751 Neighborhood of RT #4 [3351503, 3355715] PRK10250 RVT-GII AcrR UlaG Feature: gene Location: 12660-12890 bp Feature: gene Location: 13819-16051 bp Feature: domain Description: AAA_15 Location: 13822-14728 bp Feature: domain Description: AAA_15 Location: 1382 2 -1472 8 bp Feature: gene Location: 16166-17266 bp Ori: QBE70438.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16346-16880 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16346-16880 bp Feature: gene Location: 18033-18422 bp Ori: QBE70439.1 Feature: domain Description: YjgH_like Location: 18093-18414 bp Feature: domain Description: YjgH_like Location: 18093-18414 bp Feature: gene Location: 18563-19483 bp Ori: QBE70440.1 Feature: domain Description: HTH_1 Location: 18578-18749 bp Feature: domain Description: HTH_1 Location: 18578-18749 bp Feature: domain Description: PBP2_CrgA_like_3 Location: 18839-19445 bp Feature: domain Description: PBP2 _CrgA_like_3 Location: 18839-19445 bp Feature: gene Location: 1390726-1391664 bp Ori: QBE71625.1 Feature: domain Description: PRK05086 Location: 1390729-1391662 bp Feature: domain Description: PRK05086 Location: 139072 9-1391662 bp Feature: gene Location: 1392079-1392549 bp Ori: QBE71626.1 Gene: argR Feature: domain Description: PRK05066 Location: 1392082-1392544 bp Feature: domain Description: PRK05066 Location: 1392 082 -1392 544 bp Feature: gene Location: 1392967-1394220 bp Ori: QBE75070.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1393159-1393783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1393159-1393783 bp Feature: domain Description: GIIM Note: maturase Location: 1393822-1394041 bp Feature: domain Description: GIIM Note: maturase Location: 139382 2 -1394041 bp Feature: gene Location: 1394894-1395157 bp Ori: QBE71627.1 Gene: yhcN Feature: domain Description: DUF1471 Location: 1394999-1395155 bp Feature: domain Description: DUF1471 Location: 1394999-1395155 bp Feature: gene Location: 1395256-1395522 bp Ori: QBE71628.1 Gene: yhcN Feature: domain Description: DUF1471 Location: 1395361-1395520 bp Feature: domain Description: DUF1471 Location: 1395361-139552 0 bp Feature: gene Location: 2519287-2519517 bp Ori: QBE72605.1 Feature: domain Description: HTH_XRE Location: 2519329-2519497 bp Feature: domain Description: HTH_XRE Location: 2 51932 9-2 519497 bp Feature: gene Location: 2519600-2519827 bp Ori: QBE72606.1 Feature: domain Description: HTH_XRE Location: 2519642-2519804 bp Feature: domain Description: HTH_XRE Location: 2 519642 -2 519804 bp Feature: gene Location: 2520025-2521299 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 2520223-2521006 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 2 52 02 2 3-2 52 1006 bp Feature: gene Location: 2521787-2524417 bp Ori: QBE72607.1 Feature: domain Description: traC_PFL_4706 Location: 2521826-2524406 bp Feature: domain Description: traC_PFL_4706 Location: 2 52 182 6-2 52 4406 bp Feature: gene Location: 2524414-2524773 bp Ori: QBE72608.1 Feature: domain Description: conj_conj_conj_TIGR03751 Location: 2524432-2524759 bp Feature: domain Description: conj_conj_conj_TIGR03751 Location: 2 52 4432 -2 52 4759 bp Feature: gene Location: 3351503-3351871 bp Ori: QBE73288.1 Feature: domain Description: PRK10250 Location: 3351506-3351869 bp Feature: domain Description: PRK102 50 Location: 3351506-3351869 bp Feature: gene Location: 3351871-3352146 bp Feature: gene Location: 3352978-3354044 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3352984-3353602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3352 984-3353602 bp Feature: gene Location: 3354109-3354420 bp Feature: domain Description: AcrR Location: 3354118-3354331 bp Feature: domain Description: AcrR Location: 3354118-3354331 bp Feature: gene Location: 3354615-3355715 bp Ori: QBE73289.1 Feature: domain Description: UlaG Location: 3354921-3355671 bp Feature: domain Description: UlaG Location: 335492 1-3355671 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons, YjgH_like (cd02198), HTH_1 (pfam00126), PBP2_CrgA_like_3 (cd08472), PRK05086 (malate dehydrogenase; Provisional), PRK05066 (transcriptional regulator ArgR), RVT-GII, GIIM (pfam08388), DUF1471 (pfam07338)
HTH_XRE (smart00530), RVT-UG2, traC_PFL_4706 (TIGR03744), conj_conj_conj_TIGR03751, PRK10250 (MmcQ/YjbR family DNA-binding protein), AcrR (COG1309), UlaG (COG2220)