myRT

myRT report for GCA_004295125.1_ASM429512v1

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Seq: CP036170.1 [Clostridium] scindens ATCC 35704 chromosome, complete genome (3658040 bp)
Overview 1 RT 1: 1080610-1085471 bp 2 RT 2: 1118695-1123113 bp 3 RT 3: 2055113-2058975 bp 4 RT 4: 2937842-2942291 bp 5 RT 5: 3446123-3451257 bp Neighborhood of RT #1 [1080610, 1085471] PRK13857 VirD4 RVT-GII Intron_maturas2 VirD4 Neighborhood of RT #2 [1118695, 1123145] HTH_16 Relaxase RVT-GII Intron_maturas2 HNHc Relaxase MobC Neighborhood of RT #3 [2055113, 2059034] Mtd_N RVT-DGRs Phage_XkdX SNARE_Qa SNARE_Qa Neighborhood of RT #4 [2937842, 2942812] PHA00653 Avd_like RVT-DGRs Phage_holin_4_1 FlgJ PGRP Neighborhood of RT #5 [3446123, 3451289] AbiH Relaxase RVT-GII Intron_maturas2 HNHc Relaxase MobC Feature: gene Location: 1080610-1080963 bp Ori: QBF73729.1 Feature: domain Description: PRK13857 Location: 1080697-1080946 bp Feature: domain Description: PRK1 3857 Location: 1 080697-1 080946 bp Feature: gene Location: 1080978-1081409 bp Ori: QBF73730.1 Feature: domain Description: VirD4 Location: 1080984-1081251 bp Feature: domain Description: VirD4 Location: 1 080984-1 081 251 bp Feature: gene Location: 1081526-1083412 bp Ori: QBF73731.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1081859-1082693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 081 859-1 082693 bp Feature: domain Description: Intron_maturas2 Location: 1082777-1083119 bp Feature: domain Description: Intron_maturas2 Location: 1 082777-1 0831 1 9 bp Feature: gene Location: 1083905-1085329 bp Ori: QBF73732.1 Feature: domain Description: VirD4 Location: 1084139-1085300 bp Feature: domain Description: VirD4 Location: 1 0841 39-1 085300 bp Feature: gene Location: 1085274-1085471 bp Feature: gene Location: 1118695-1118946 bp Ori: QBF73771.1 Feature: domain Description: HTH_16 Location: 1118722-1118914 bp Feature: domain Description: HTH_1 6 Location: 1 1 1 8722-1 1 1 891 4 bp Feature: gene Location: 1119010-1119948 bp Ori: QBF73772.1 Feature: domain Description: Relaxase Location: 1119013-1119325 bp Feature: domain Description: Relaxase Location: 1 1 1 901 3-1 1 1 9325 bp Feature: gene Location: 1120149-1121951 bp Ori: QBF73773.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1120416-1121232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 2041 6-1 1 21 232 bp Feature: domain Description: Intron_maturas2 Location: 1121367-1121607 bp Feature: domain Description: Intron_maturas2 Location: 1 1 21 367-1 1 21 607 bp Feature: domain Description: HNHc Note: nucleases Location: 1121781-1121931 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 21 781 -1 1 21 931 bp Feature: gene Location: 1122493-1122855 bp Ori: QBF73774.1 Feature: domain Description: Relaxase Location: 1122523-1122820 bp Feature: domain Description: Relaxase Location: 1 1 22523-1 1 22820 bp Feature: gene Location: 1122816-1123145 bp Ori: QBF73775.1 Feature: domain Description: MobC Location: 1122996-1123113 bp Feature: domain Description: MobC Location: 1 1 22996-1 1 231 1 3 bp Feature: gene Location: 2055113-2055499 bp Ori: QBF74696.1 Feature: domain Description: Mtd_N Location: 2055137-2055254 bp Feature: domain Description: Mtd_N Location: 20551 37-2055254 bp Feature: gene Location: 2055499-2056737 bp Feature: gene Location: 2057195-2058493 bp Ori: QBF74698.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2057444-2058152 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2057444-20581 52 bp Feature: gene Location: 2058646-2058798 bp Ori: QBF74699.1 Feature: domain Description: Phage_XkdX Location: 2058667-2058778 bp Feature: domain Description: Phage_XkdX Location: 2058667-2058778 bp Feature: gene Location: 2058795-2059034 bp Ori: QBF74700.1 Feature: domain Description: SNARE_Qa Location: 2058816-2058885 bp Feature: domain Description: SNARE_Qa Location: 205881 6-2058885 bp Feature: domain Description: SNARE_Qa Location: 2058915-2058975 bp Feature: domain Description: SNARE_Qa Location: 205891 5-2058975 bp Feature: gene Location: 2937842-2938954 bp Ori: QBF75595.1 Feature: domain Description: PHA00653 Location: 2937935-2938952 bp Feature: domain Description: PHA00653 Location: 2937935-2938952 bp Feature: gene Location: 2939007-2939423 bp Ori: QBF75596.1 Feature: domain Description: Avd_like Location: 2939097-2939400 bp Feature: domain Description: Avd_like Location: 2939097-2939400 bp Feature: gene Location: 2939869-2940798 bp Ori: QBF75597.1 Gene: ltrA_3 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2939974-2940685 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2939974-2940685 bp Feature: gene Location: 2940795-2941313 bp Ori: QBF75598.1 Feature: domain Description: Phage_holin_4_1 Location: 2940894-2941242 bp Feature: domain Description: Phage_holin_4_1 Location: 2940894-2941 242 bp Feature: gene Location: 2941310-2942812 bp Ori: QBF75599.1 Gene: lytG Feature: domain Description: FlgJ Location: 2941319-2941814 bp Feature: domain Description: FlgJ Location: 2941 31 9-2941 81 4 bp Feature: domain Description: PGRP Location: 2941895-2942291 bp Feature: domain Description: PGRP Location: 2941 895-2942291 bp Feature: gene Location: 3446123-3447142 bp Ori: QBF76100.1 Feature: domain Description: AbiH Location: 3446195-3447068 bp Feature: domain Description: AbiH Location: 34461 95-3447068 bp Feature: gene Location: 3447151-3448170 bp Ori: QBF76101.1 Feature: domain Description: Relaxase Location: 3447157-3447544 bp Feature: domain Description: Relaxase Location: 34471 57-3447544 bp Feature: gene Location: 3448293-3450095 bp Ori: QBF76102.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3448560-3449376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3448560-3449376 bp Feature: domain Description: Intron_maturas2 Location: 3449511-3449751 bp Feature: domain Description: Intron_maturas2 Location: 344951 1 -3449751 bp Feature: domain Description: HNHc Note: nucleases Location: 3449925-3450075 bp Feature: domain Description: HNHc Note: nucleases Location: 3449925-3450075 bp Feature: gene Location: 3450637-3450999 bp Ori: QBF76103.1 Feature: domain Description: Relaxase Location: 3450673-3450964 bp Feature: domain Description: Relaxase Location: 3450673-3450964 bp Feature: gene Location: 3450960-3451289 bp Ori: QBF76104.1 Feature: domain Description: MobC Location: 3451140-3451257 bp Feature: domain Description: MobC Location: 3451 1 40-3451 257 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13857 (pilin major subunit VirB2), VirD4 (COG3505), RVT-GII, Intron_maturas2 (pfam01348), HTH_16 (pfam12645), Relaxase (pfam03432), HNHc (smart00507), MobC (pfam05713), Mtd_N (pfam18454), RVT-DGRs
Phage_XkdX (pfam09693), SNARE_Qa (cd15840), PHA00653 (mtd;major tropism determinant), Avd_like (cd16376), Phage_holin_4_1 (pfam05105), FlgJ (COG1705), PGRP (smart00701), AbiH (pfam14253)