myRT

myRT report for GCA_004295365.1_ASM429536v1

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Seq: CP036178.1 Escherichia coli strain WCHEC025970 plasmid pCTXM199_025970, complete sequence (238258 bp)
Overview 1 RT 1: 146017-149651 bp Neighborhood of RT #1 [146017, 149677] RVT-GII PRK10276 Feature: gene Location: 146017-146373 bp Feature: gene Location: 146523-147140 bp Feature: gene Location: 147354-148838 bp Ori: QBF94014.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 147756-148446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 47756-1 48446 bp Feature: gene Location: 148838-149119 bp Feature: gene Location: 149243-149677 bp Ori: QBF93917.1 Gene: umuD Feature: domain Description: PRK10276 Location: 149291-149651 bp Feature: domain Description: PRK1 0276 Location: 1 49291 -1 49651 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: CP036177.1 Escherichia coli strain WCHEC025970 chromosome, complete genome (4794992 bp)
Overview 1 RT 1: 515436-519196 bp 2 RT 2: 808594-812885 bp 3 RT 3: 2762853-2768288 bp 4 RT 4: 3688901-3694643 bp 5 RT 5: 4094408-4097839 bp 6 RT 6: 4109376-4117149 bp Neighborhood of RT #1 [515436, 519198] InsE RVT-GII GIIM PHA02517 DUF1016_N Neighborhood of RT #2 [808594, 812885] YesM RVT-GII GIIM RVT-GII Neighborhood of RT #3 [2762853, 2768288] InsE RVT-GII GIIM PHA02517 Neighborhood of RT #4 [3688901, 3694741] XdhC PBP2_CrgA_like_5 RVT-UG8 RVT-UG3 PRK09678 Neighborhood of RT #5 [4094408, 4098236] PHA02517 RVT-GII GIIM InsE Neighborhood of RT #6 [4109376, 4117256] InsE RVT-GII GIIM PHA02517 Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 515436-516175 bp Feature: domain Description: InsE Location: 515439-515778 bp Feature: domain Description: InsE Location: 515439-515778 bp Feature: gene Location: 516168-516539 bp Feature: gene Location: 516848-518356 bp Ori: QBF93608.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 517106-517838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 517106-517838 bp Feature: domain Description: GIIM Note: maturase Location: 517913-518111 bp Feature: domain Description: GIIM Note: maturase Location: 517913-518111 bp Feature: gene Location: 518446-518919 bp Feature: domain Description: PHA02517 Location: 518452-518917 bp Feature: domain Description: PHA02 517 Location: 518452 -518917 bp Feature: gene Location: 518962-519198 bp Feature: domain Description: DUF1016_N Location: 519019-519196 bp Feature: domain Description: DUF1016_N Location: 519019-519196 bp Feature: gene Location: 808594-809823 bp Ori: QBF90133.1 Feature: domain Description: YesM Location: 809074-809815 bp Feature: domain Description: YesM Location: 809074-809815 bp Feature: gene Location: 809896-810084 bp Feature: gene Location: 810406-810927 bp Ori: QBF90135.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 810412-810694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 810412 -810694 bp Feature: domain Description: GIIM Note: maturase Location: 810742-810922 bp Feature: domain Description: GIIM Note: maturase Location: 810742 -81092 2 bp Feature: gene Location: 811103-811494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 811433-811493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 811433-811493 bp Feature: gene Location: 811719-812006 bp Feature: gene Location: 811980-812885 bp Feature: gene Location: 2762853-2763592 bp Feature: domain Description: InsE Location: 2762856-2763195 bp Feature: domain Description: InsE Location: 2 762 856-2 763195 bp Feature: gene Location: 2763585-2763956 bp Feature: gene Location: 2764265-2765773 bp Ori: QBF93693.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2764523-2765255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 76452 3-2 7652 55 bp Feature: domain Description: GIIM Note: maturase Location: 2765330-2765528 bp Feature: domain Description: GIIM Note: maturase Location: 2 765330-2 76552 8 bp Feature: gene Location: 2765863-2766336 bp Feature: domain Description: PHA02517 Location: 2765869-2766334 bp Feature: domain Description: PHA02 517 Location: 2 765869-2 766334 bp Feature: gene Location: 2766378-2768288 bp Feature: gene Location: 3688901-3689857 bp Ori: QBF92659.1 Feature: domain Description: XdhC Location: 3688979-3689834 bp Feature: domain Description: XdhC Location: 3688979-3689834 bp Feature: gene Location: 3689836-3690246 bp Ori: QBF92660.1 Feature: domain Description: PBP2_CrgA_like_5 Location: 3689908-3690220 bp Feature: domain Description: PBP2 _CrgA_like_5 Location: 3689908-36902 2 0 bp Feature: gene Location: 3690788-3692806 bp Ori: QBF92661.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 3691361-3691814 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 3691361-3691814 bp Feature: gene Location: 3692797-3694074 bp Ori: QBF92662.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3693085-3693580 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3693085-3693580 bp Feature: gene Location: 3694121-3694321 bp Feature: gene Location: 3694469-3694741 bp Ori: QBF92664.1 Feature: domain Description: PRK09678 Location: 3694478-3694643 bp Feature: domain Description: PRK09678 Location: 3694478-3694643 bp Feature: gene Location: 4094408-4094665 bp Feature: gene Location: 4094748-4095235 bp Feature: domain Description: PHA02517 Location: 4094751-4094922 bp Feature: domain Description: PHA02 517 Location: 4094751-409492 2 bp Feature: gene Location: 4095316-4096824 bp Ori: QBF93744.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4095574-4096306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4095574-4096306 bp Feature: domain Description: GIIM Note: maturase Location: 4096381-4096579 bp Feature: domain Description: GIIM Note: maturase Location: 4096381-4096579 bp Feature: gene Location: 4097133-4097504 bp Feature: gene Location: 4097497-4098236 bp Feature: domain Description: InsE Location: 4097500-4097839 bp Feature: domain Description: InsE Location: 4097500-4097839 bp Feature: gene Location: 4109376-4110093 bp Feature: domain Description: InsE Location: 4109415-4109664 bp Feature: domain Description: InsE Location: 4109415-4109664 bp Feature: gene Location: 4110089-4110457 bp Feature: gene Location: 4110766-4112274 bp Ori: QBF93745.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4111024-4111756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 411102 4-4111756 bp Feature: domain Description: GIIM Note: maturase Location: 4111831-4112029 bp Feature: domain Description: GIIM Note: maturase Location: 4111831-4112 02 9 bp Feature: gene Location: 4112364-4112837 bp Feature: domain Description: PHA02517 Location: 4112370-4112835 bp Feature: domain Description: PHA02 517 Location: 4112 370-4112 835 bp Feature: gene Location: 4112879-4113981 bp Feature: domain Description: Arm-DNA-bind_3 Location: 4112888-4113140 bp Feature: domain Description: Arm-DNA-bind_3 Location: 4112 888-4113140 bp Feature: gene Location: 4114436-4115368 bp Ori: QBF93020.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4114538-4115132 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4114538-4115132 bp Feature: gene Location: 4115370-4116338 bp Feature: gene Location: 4116984-4117256 bp Ori: QBF93021.1 Feature: domain Description: PRK09678 Location: 4116993-4117149 bp Feature: domain Description: PRK09678 Location: 4116993-4117149 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), DUF1016_N (pfam17761), YesM (COG2972), XdhC (COG1975), PBP2_CrgA_like_5 (cd08474), RVT-UG8, RVT-UG3
PRK09678 (DNA-binding transcriptional regulator; Provisional), Arm-DNA-bind_3 (pfam13356), RVT-Retrons