myRT

myRT report for GCA_004295565.1_ASM429556v1

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Seq: AP019416.1 Halomonas olivaria TYRC17 DNA, complete genome (4998083 bp)
Overview 1 RT 1: 482326-487965 bp 2 RT 2: 2275563-2280513 bp 3 RT 3: 2423845-2427080 bp 4 RT 4: 3333687-3337743 bp 5 RT 5: 3855316-3857863 bp 6 RT 6: 4329865-4333927 bp 7 RT 7: 4796228-4800798 bp Neighborhood of RT #1 [482326, 487976] FtsX PRK06596 RVT-GII slmA PRK00942 Neighborhood of RT #2 [2275563, 2280701] RVT-GII GIIM RVT-GII RVT-GII PRK09228 PRK09228 Neighborhood of RT #3 [2423845, 2427223] DUF1654 RVT-UNC YiaG Neighborhood of RT #4 [3333687, 3337811] adrA GGDEF RVT-GII group_II_RT_mat BluB Neighborhood of RT #5 [3855316, 3858006] PRK05387 PRK05387 RVT-GII GIIM Neighborhood of RT #6 [4329865, 4334043] TIR_2 RVT-Retrons Phosphodiest Neighborhood of RT #7 [4796228, 4800833] AmpC CsgD RVT-GII DctM DctM Feature: gene Location: 482326-483201 bp Ori: BBI48250.1 Gene: ftsX Feature: domain Description: FtsX Location: 482479-483184 bp Feature: domain Description: FtsX Location: 482479-4831 84 bp Feature: gene Location: 483567-484436 bp Ori: BBI48251.1 Gene: rpoH Feature: domain Description: PRK06596 Location: 483600-484419 bp Feature: domain Description: PRK06596 Location: 483600-48441 9 bp Feature: gene Location: 485049-486032 bp Ori: BBI48252.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 485301-485919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 485301 -48591 9 bp Feature: gene Location: 486450-487001 bp Ori: BBI48253.1 Gene: slmA Feature: domain Description: slmA Location: 486453-486966 bp Feature: domain Description: slmA Location: 486453-486966 bp Feature: gene Location: 487077-487976 bp Ori: BBI48254.1 Gene: argB Feature: domain Description: PRK00942 Location: 487110-487965 bp Feature: domain Description: PRK00942 Location: 4871 1 0-487965 bp Feature: gene Location: 2275563-2276921 bp Ori: BBI50883.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2275887-2276505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2275887-2276505 bp Feature: domain Description: GIIM Note: maturase Location: 2276553-2276778 bp Feature: domain Description: GIIM Note: maturase Location: 2276553-2276778 bp Feature: gene Location: 2277774-2278409 bp Ori: BBI50884.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2277939-2278311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2277939-227831 1 bp Feature: gene Location: 2278453-2278671 bp Ori: BBI50885.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2278456-2278558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2278456-2278558 bp Feature: gene Location: 2279386-2279673 bp Ori: BBI50886.1 Feature: domain Description: PRK09228 Location: 2279389-2279665 bp Feature: domain Description: PRK09228 Location: 2279389-2279665 bp Feature: gene Location: 2279619-2280701 bp Ori: BBI50887.1 Feature: domain Description: PRK09228 Location: 2279640-2280513 bp Feature: domain Description: PRK09228 Location: 2279640-228051 3 bp Feature: gene Location: 2423845-2424126 bp Ori: BBI51127.1 Feature: domain Description: DUF1654 Location: 2423857-2424016 bp Feature: domain Description: DUF1 654 Location: 2423857-242401 6 bp Feature: gene Location: 2424842-2425078 bp Feature: gene Location: 2425544-2425711 bp Ori: BBI51129.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 2425547-2425703 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 2425547-2425703 bp Feature: gene Location: 2425851-2426018 bp Feature: gene Location: 2426804-2427223 bp Ori: BBI51131.1 Feature: domain Description: YiaG Location: 2426867-2427080 bp Feature: domain Description: YiaG Location: 2426867-2427080 bp Feature: gene Location: 3333687-3334544 bp Ori: BBI52508.1 Feature: domain Description: adrA Location: 3333717-3334200 bp Feature: domain Description: adrA Location: 333371 7-3334200 bp Feature: gene Location: 3334442-3335206 bp Ori: BBI52509.1 Feature: domain Description: GGDEF Location: 3334640-3335171 bp Feature: domain Description: GGDEF Location: 3334640-33351 71 bp Feature: gene Location: 3335668-3336315 bp Ori: BBI52510.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3335674-3336202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3335674-3336202 bp Feature: gene Location: 3336342-3336563 bp Ori: BBI52511.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 3336348-3336546 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3336348-3336546 bp Feature: gene Location: 3337119-3337811 bp Ori: BBI52512.1 Feature: domain Description: BluB Location: 3337143-3337743 bp Feature: domain Description: BluB Location: 33371 43-3337743 bp Feature: gene Location: 3855316-3855810 bp Ori: BBI53313.1 Feature: domain Description: PRK05387 Location: 3855343-3855625 bp Feature: domain Description: PRK05387 Location: 3855343-3855625 bp Feature: gene Location: 3855756-3856280 bp Ori: BBI53314.1 Feature: domain Description: PRK05387 Location: 3855759-3856275 bp Feature: domain Description: PRK05387 Location: 3855759-3856275 bp Feature: gene Location: 3856780-3858006 bp Ori: BBI53315.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3856972-3857590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3856972-3857590 bp Feature: domain Description: GIIM Note: maturase Location: 3857638-3857863 bp Feature: domain Description: GIIM Note: maturase Location: 3857638-3857863 bp Feature: gene Location: 4329865-4330059 bp Ori: BBI54011.1 Feature: domain Description: TIR_2 Location: 4329937-4330051 bp Feature: domain Description: TIR_2 Location: 4329937-4330051 bp Feature: gene Location: 4330074-4330292 bp Feature: gene Location: 4330329-4330754 bp Ori: BBI54013.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4330335-4330734 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4330335-4330734 bp Feature: gene Location: 4332416-4332715 bp Feature: gene Location: 4332697-4334043 bp Ori: BBI54015.1 Feature: domain Description: Phosphodiest Location: 4332718-4333927 bp Feature: domain Description: Phosphodiest Location: 433271 8-4333927 bp Feature: gene Location: 4796228-4796371 bp Ori: BBI54654.1 Feature: domain Description: AmpC Location: 4796234-4796345 bp Feature: domain Description: AmpC Location: 4796234-4796345 bp Feature: gene Location: 4796432-4796935 bp Ori: BBI54655.1 Feature: domain Description: CsgD Location: 4796741-4796924 bp Feature: domain Description: CsgD Location: 4796741 -4796924 bp Feature: gene Location: 4797393-4798448 bp Ori: BBI54656.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4797717-4798335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 479771 7-4798335 bp Feature: gene Location: 4799146-4799379 bp Feature: gene Location: 4799601-4800833 bp Ori: BBI54658.1 Feature: domain Description: DctM Location: 4799634-4800150 bp Feature: domain Description: DctM Location: 4799634-48001 50 bp Feature: domain Description: DctM Location: 4800390-4800798 bp Feature: domain Description: DctM Location: 4800390-4800798 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FtsX (pfam02687), PRK06596 (RNA polymerase factor sigma-32; Reviewed), RVT-GII, slmA (PRK09480), PRK00942 (acetylglutamate kinase; Provisional), GIIM (pfam08388), PRK09228 (guanine deaminase; Provisional), DUF1654 (pfam07867), RVT-UG25/RVT-G2L/RVT-CRISPR(RVT-UNC), YiaG (COG2944)
adrA (PRK10245), GGDEF (TIGR00254), group_II_RT_mat (TIGR04416), BluB (TIGR02476), PRK05387 (histidinol-phosphate aminotransferase; Provisional), TIR_2 (pfam13676), RVT-Retrons, Phosphodiest (pfam01663), AmpC (COG1680), CsgD (COG2771)
DctM (pfam06808)