myRT

myRT report for GCA_004295585.1_ASM429558v1

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Seq: AP019400.1 Cohnella sp. HS21 DNA, complete genome (7059027 bp)
Overview 1 RT 1: 3074603-3081202 bp 2 RT 2: 3191258-3199320 bp 3 RT 3: 3287866-3294802 bp 4 RT 4: 4084940-4089476 bp 5 RT 5: 4181349-4185680 bp Neighborhood of RT #1 [3074603, 3081213] MdlB MdlB RVT-GII group_II_RT_mat SGNH_hydrolase_YpmR_like Neighborhood of RT #2 [3191258, 3199328] MFS_MMR_MDR_like LysR RVT-UNC nitrilase PRK12522 Neighborhood of RT #3 [3287866, 3294802] RVT-UG12 EEXXEc_NFX1 PKc Neighborhood of RT #4 [4084940, 4089640] RVT-GII GIIM SPS1 Metallophos_2 Neighborhood of RT #5 [4181349, 4186003] HTH_XRE RVT-GII GIIM Rhs_assc_core PT-HINT Feature: gene Location: 3074603-3076411 bp Ori: BBI33266.1 Gene: yknU Feature: domain Description: MdlB Location: 3074609-3076328 bp Feature: domain Description: MdlB Location: 3074609-3076328 bp Feature: gene Location: 3076408-3078207 bp Ori: BBI33267.1 Gene: yknV Feature: domain Description: MdlB Location: 3076468-3078187 bp Feature: domain Description: MdlB Location: 3076468-30781 87 bp Feature: gene Location: 3078801-3079700 bp Ori: BBI33268.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3079107-3079659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30791 07-3079659 bp Feature: gene Location: 3079672-3080103 bp Ori: BBI33269.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 3079678-3080020 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 3079678-3080020 bp Feature: gene Location: 3080398-3081213 bp Ori: BBI33270.1 Feature: domain Description: SGNH_hydrolase_YpmR_like Location: 3080590-3081202 bp Feature: domain Description: SGNH_hydrolase_YpmR_like Location: 3080590-3081 202 bp Feature: gene Location: 3191258-3192664 bp Ori: BBI33368.1 Gene: ywoD Feature: domain Description: MFS_MMR_MDR_like Location: 3191297-3192539 bp Feature: domain Description: MFS_MMR_MDR_like Location: 31 91 297-31 92539 bp Feature: gene Location: 3192775-3193713 bp Ori: BBI33369.1 Feature: domain Description: LysR Location: 3192778-3193639 bp Feature: domain Description: LysR Location: 31 92778-31 93639 bp Feature: gene Location: 3194415-3197627 bp Ori: BBI33370.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 3195231-3195486 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 31 95231 -31 95486 bp Feature: gene Location: 3197632-3198531 bp Ori: BBI33371.1 Feature: domain Description: nitrilase Location: 3197743-3198346 bp Feature: domain Description: nitrilase Location: 31 97743-31 98346 bp Feature: gene Location: 3198804-3199328 bp Ori: BBI33372.1 Feature: domain Description: PRK12522 Location: 3198819-3199320 bp Feature: domain Description: PRK1 2522 Location: 31 9881 9-31 99320 bp Feature: gene Location: 3287866-3288666 bp Feature: gene Location: 3288734-3289048 bp Feature: gene Location: 3289510-3291495 bp Ori: BBI33461.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 3289861-3290314 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 3289861 -329031 4 bp Feature: domain Description: EEXXEc_NFX1 Location: 3291220-3291403 bp Feature: domain Description: EEXXEc_NFX1 Location: 3291 220-3291 403 bp Feature: gene Location: 3291678-3293462 bp Ori: BBI33462.1 Feature: domain Description: PKc Location: 3292182-3292797 bp Feature: domain Description: PKc Location: 32921 82-3292797 bp Feature: gene Location: 3293891-3294802 bp Feature: gene Location: 4084940-4085146 bp Feature: gene Location: 4085266-4085538 bp Feature: gene Location: 4085773-4087074 bp Ori: BBI34229.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4086079-4086712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4086079-408671 2 bp Feature: domain Description: GIIM Note: maturase Location: 4086790-4087018 bp Feature: domain Description: GIIM Note: maturase Location: 4086790-408701 8 bp Feature: gene Location: 4088003-4088896 bp Ori: BBI34230.1 Feature: domain Description: SPS1 Location: 4088171-4088804 bp Feature: domain Description: SPS1 Location: 40881 71 -4088804 bp Feature: gene Location: 4088909-4089640 bp Ori: BBI34231.1 Gene: prpA Feature: domain Description: Metallophos_2 Location: 4088918-4089476 bp Feature: domain Description: Metallophos_2 Location: 408891 8-4089476 bp Feature: gene Location: 4181349-4181525 bp Feature: gene Location: 4181868-4182188 bp Ori: BBI34331.1 Feature: domain Description: HTH_XRE Location: 4181871-4182024 bp Feature: domain Description: HTH_XRE Location: 41 81 871 -41 82024 bp Feature: gene Location: 4182352-4183680 bp Ori: BBI34332.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4182619-4183240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 8261 9-41 83240 bp Feature: domain Description: GIIM Note: maturase Location: 4183291-4183519 bp Feature: domain Description: GIIM Note: maturase Location: 41 83291 -41 8351 9 bp Feature: gene Location: 4184469-4184837 bp Feature: gene Location: 4184852-4186003 bp Ori: BBI34334.1 Feature: domain Description: Rhs_assc_core Location: 4184855-4184969 bp Feature: domain Description: Rhs_assc_core Location: 41 84855-41 84969 bp Feature: domain Description: PT-HINT Location: 4185305-4185680 bp Feature: domain Description: PT-HINT Location: 41 85305-41 85680 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MdlB (COG1132), RVT-GII, group_II_RT_mat (TIGR04416), SGNH_hydrolase_YpmR_like (cd04506), MFS_MMR_MDR_like (cd17504), LysR (COG0583), RVT-UG25/RVT-UG23/RVT-DGRs/RVT-UG6(RVT-UNC), nitrilase (cl11424), PRK12522 (RNA polymerase sigma factor; Provisional), RVT-UG12
EEXXEc_NFX1 (cd17936), PKc (cd00180), GIIM (pfam08388), SPS1 (COG0515), Metallophos_2 (pfam12850), HTH_XRE (smart00530), Rhs_assc_core (TIGR03696), PT-HINT (pfam07591)