myRT

myRT report for GCA_004322855.1_ASM432285v1

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Seq: CP036402.1 Egibacter rhizosphaerae strain EGI 80759 chromosome, complete genome (4637169 bp)
Overview 1 RT 1: 315752-322561 bp 2 RT 2: 403951-407691 bp 3 RT 3: 541244-546842 bp 4 RT 4: 928457-937723 bp Neighborhood of RT #1 [315752, 322674] PRK06557 L-ribulokinase RVT-GII RVT-GII GIIM RVT-DGRs DDE_Tnp_1_4 Neighborhood of RT #2 [403951, 407765] BetT RVT-GII GIIM BCCT Neighborhood of RT #3 [541244, 547000] Phage_int_SAM_1 INT_RitA_C_like IS285 RVT-GII GIIM COG3618 MFS_1 Neighborhood of RT #4 [928457, 937723] SRPBCC_CalC_Aha1-like_2 RVT-GII GIIM InsE Feature: gene Location: 315752-316429 bp Ori: QBI18357.1 Feature: domain Description: PRK06557 Location: 315782-316424 bp Feature: domain Description: PRK06557 Location: 31 5782-31 6424 bp Feature: gene Location: 316426-318168 bp Ori: QBI18358.1 Gene: araB Feature: domain Description: L-ribulokinase Location: 316519-318118 bp Feature: domain Description: L-ribulokinase Location: 31 651 9-31 81 1 8 bp Feature: gene Location: 318384-319331 bp Ori: QBI18359.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 318639-319125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 8639-31 91 25 bp Feature: gene Location: 319593-321035 bp Ori: QBI18360.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 319914-320601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 991 4-320601 bp Feature: domain Description: GIIM Note: maturase Location: 320676-320898 bp Feature: domain Description: GIIM Note: maturase Location: 320676-320898 bp Feature: gene Location: 321148-321531 bp Ori: QBI21853.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 321223-321361 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 321 223-321 361 bp Feature: gene Location: 321473-321697 bp Feature: gene Location: 321811-322674 bp Ori: QBI18362.1 Feature: domain Description: DDE_Tnp_1_4 Location: 321988-322561 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 321 988-322561 bp Feature: gene Location: 403951-404544 bp Ori: QBI18431.1 Feature: domain Description: BetT Location: 404032-404455 bp Feature: domain Description: BetT Location: 404032-404455 bp Feature: gene Location: 404715-405020 bp Feature: gene Location: 405059-406513 bp Ori: QBI18432.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 405377-406061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 405377-406061 bp Feature: domain Description: GIIM Note: maturase Location: 406133-406361 bp Feature: domain Description: GIIM Note: maturase Location: 4061 33-406361 bp Feature: gene Location: 406431-406631 bp Feature: gene Location: 406626-407765 bp Ori: QBI18434.1 Feature: domain Description: BCCT Location: 406629-407691 bp Feature: domain Description: BCCT Location: 406629-407691 bp Feature: gene Location: 541244-542458 bp Ori: QBI18542.1 Feature: domain Description: Phage_int_SAM_1 Location: 541586-541820 bp Feature: domain Description: Phage_int_SAM_1 Location: 541 586-541 820 bp Feature: domain Description: INT_RitA_C_like Location: 541916-542432 bp Feature: domain Description: INT_RitA_C_like Location: 541 91 6-542432 bp Feature: gene Location: 542630-542764 bp Ori: QBI18543.1 Feature: domain Description: IS285 Location: 542633-542759 bp Feature: domain Description: IS285 Location: 542633-542759 bp Feature: gene Location: 542922-543668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 542925-543240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 542925-543240 bp Feature: domain Description: GIIM Note: maturase Location: 543324-543525 bp Feature: domain Description: GIIM Note: maturase Location: 543324-543525 bp Feature: gene Location: 544816-545685 bp Ori: QBI18544.1 Feature: domain Description: COG3618 Location: 544840-545683 bp Feature: domain Description: COG361 8 Location: 544840-545683 bp Feature: gene Location: 545792-547000 bp Ori: QBI18545.1 Feature: domain Description: MFS_1 Location: 545861-546842 bp Feature: domain Description: MFS_1 Location: 545861 -546842 bp Feature: gene Location: 928457-928918 bp Ori: QBI18857.1 Feature: domain Description: SRPBCC_CalC_Aha1-like_2 Location: 928472-928913 bp Feature: domain Description: SRPBCC_CalC_Aha1 -like_2 Location: 928472-92891 3 bp Feature: gene Location: 929483-930400 bp Feature: gene Location: 930628-931881 bp Ori: QBI18859.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930844-931504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930844-931 504 bp Feature: domain Description: GIIM Note: maturase Location: 931588-931789 bp Feature: domain Description: GIIM Note: maturase Location: 931 588-931 789 bp Feature: gene Location: 932617-933093 bp Ori: QBI18860.1 Feature: domain Description: InsE Location: 932668-932977 bp Feature: domain Description: InsE Location: 932668-932977 bp Feature: gene Location: 933815-937723 bp Sorry, your browser 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Associated domains:myRT PRK06557 (L-ribulose-5-phosphate 4-epimerase; Validated), L-ribulokinase (TIGR01234), RVT-GII, GIIM (pfam08388), RVT-DGRs, DDE_Tnp_1_4 (pfam13701), BetT (COG1292), BCCT (pfam02028), Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188)
IS285 (COG3328), COG3618 (Predicted metal-dependent hydrolase, TIM-barrel fold ), MFS_1 (pfam07690), SRPBCC_CalC_Aha1-like_2 (cd08895), InsE (COG2963)