myRT

myRT report for GCA_004328785.1_ASM432878v1

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Seq: CP025278.1 Salmonella enterica subsp. enterica serovar Montevideo str. USDA-ARS-USMARC-1913 chromosome, complete genome (4985589 bp)
Overview 1 RT 1: 1142805-1145870 bp 2 RT 2: 4457073-4462902 bp Neighborhood of RT #1 [1142805, 1145870] TIR-like RVT-Retrons InsE Neighborhood of RT #2 [4457073, 4462907] DUF4156 DUF2188 RVT_N RVT-GII GIIM HNHc groEL groES Feature: gene Location: 1142805-1143014 bp Feature: gene Location: 1143080-1143922 bp Ori: QBJ50578.1 Feature: domain Description: TIR-like Location: 1143488-1143842 bp Feature: domain Description: TIR-like Location: 1 1 43488-1 1 43842 bp Feature: gene Location: 1143972-1144931 bp Ori: QBJ50579.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1144152-1144674 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 441 52-1 1 44674 bp Feature: gene Location: 1144962-1145189 bp Feature: gene Location: 1145621-1145870 bp Ori: QBJ50581.1 Feature: domain Description: InsE Location: 1145630-1145870 bp Feature: domain Description: InsE Location: 1 1 45630-1 1 45870 bp Feature: gene Location: 4457073-4457426 bp Ori: QBJ53774.1 Feature: domain Description: DUF4156 Location: 4457142-4457418 bp Feature: domain Description: DUF41 56 Location: 44571 42-445741 8 bp Feature: gene Location: 4457781-4458011 bp Ori: QBJ54413.1 Feature: domain Description: DUF2188 Location: 4457799-4457976 bp Feature: domain Description: DUF21 88 Location: 4457799-4457976 bp Feature: gene Location: 4458157-4459848 bp Ori: QBJ54414.1 Gene: ltrA Feature: domain Description: RVT_N Location: 4458238-4458472 bp Feature: domain Description: RVT_N Location: 4458238-4458472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4458526-4459171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4458526-44591 71 bp Feature: domain Description: GIIM Note: maturase Location: 4459225-4459456 bp Feature: domain Description: GIIM Note: maturase Location: 4459225-4459456 bp Feature: domain Description: HNHc Note: nucleases Location: 4459666-4459822 bp Feature: domain Description: HNHc Note: nucleases Location: 4459666-4459822 bp Feature: gene Location: 4460924-4462570 bp Ori: QBJ53775.1 Gene: groL Feature: domain Description: groEL Location: 4460930-4462556 bp Feature: domain Description: groEL Location: 4460930-4462556 bp Feature: gene Location: 4462614-4462907 bp Ori: QBJ53776.1 Gene: groES Feature: domain Description: groES Location: 4462617-4462902 bp Feature: domain Description: groES Location: 446261 7-4462902 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIR-like (pfam10137), RVT-Retrons, InsE (COG2963), DUF4156 (pfam13698), DUF2188 (pfam09954), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852)
groES (PRK14533)