myRT

myRT report for GCA_004337615.1_ASM433761v1

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Seq: CP037437.1 Lactobacillus plantarum strain EM plasmid pEM8, complete sequence (21426 bp)
Overview 1 RT 1: 18620-21040 bp Neighborhood of RT #1 [18620, 21324] Rep_3 DUF536 RVT-Retrons Feature: gene Location: 18620-19555 bp Ori: QBK74824.1 Feature: domain Description: Rep_3 Location: 18626-19292 bp Feature: domain Description: Rep_3 Location: 1 8626-1 9292 bp Feature: gene Location: 19548-20063 bp Ori: QBK74825.1 Feature: domain Description: DUF536 Location: 19815-19953 bp Feature: domain Description: DUF536 Location: 1 981 5-1 9953 bp Feature: gene Location: 20317-21324 bp Ori: QBK74826.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 20449-21040 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 20449-21 040 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rep_3 (pfam01051), DUF536 (pfam04394), RVT-Retrons

Seq: CP037436.1 Lactobacillus plantarum strain EM plasmid pEM7, complete sequence (41643 bp)
Overview 1 RT 1: 1107-7085 bp Neighborhood of RT #1 [1107, 7093] PRK09183 COG4584 RVT-UG2 PinE Feature: gene Location: 1107-1919 bp Ori: QBK74801.1 Feature: domain Description: PRK09183 Location: 1119-1836 bp Feature: domain Description: PRK09183 Location: 1119-1836 bp Feature: gene Location: 1924-3138 bp Ori: QBK74776.1 Feature: domain Description: COG4584 Location: 1930-2659 bp Feature: domain Description: COG4584 Location: 1930-2 659 bp Feature: gene Location: 3277-4803 bp Ori: QBK74777.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 3502-4318 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 3502 -4318 bp Feature: gene Location: 5510-6129 bp Feature: gene Location: 6476-7093 bp Ori: QBK74778.1 Feature: domain Description: PinE Location: 6479-7085 bp Feature: domain Description: PinE Location: 6479-7085 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09183 (transposase/IS protein; Provisional), COG4584 (Transposase ), RVT-UG2, PinE (COG1961)

Seq: CP037435.1 Lactobacillus plantarum strain EM plasmid pEM6, complete sequence (57548 bp)
Overview 1 RT 1: 17207-21858 bp 2 RT 2: 35724-40374 bp Neighborhood of RT #1 [17207, 21858] Hol_Tox RVT-GII PolY_Pol_V_umuC Neighborhood of RT #2 [35724, 40374] Hol_Tox RVT-GII PolY_Pol_V_umuC Feature: gene Location: 17207-17311 bp Ori: QBK74745.1 Feature: domain Description: Hol_Tox Location: 17210-17309 bp Feature: domain Description: Hol_Tox Location: 17210-173 09 bp Feature: gene Location: 17551-17616 bp Feature: gene Location: 18314-20158 bp Ori: QBK74746.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18623-19355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18623 -193 55 bp Feature: gene Location: 20301-21545 bp Ori: QBK74747.1 Feature: domain Description: PolY_Pol_V_umuC Location: 20310-21327 bp Feature: domain Description: PolY_Pol_V_umuC Location: 203 10-213 27 bp Feature: gene Location: 21538-21858 bp Feature: gene Location: 35724-35828 bp Ori: QBK74755.1 Feature: domain Description: Hol_Tox Location: 35727-35826 bp Feature: domain Description: Hol_Tox Location: 3 5727-3 5826 bp Feature: gene Location: 36068-36133 bp Feature: gene Location: 36831-38675 bp Ori: QBK74756.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37140-37872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 7140-3 7872 bp Feature: gene Location: 38818-40061 bp Feature: domain Description: PolY_Pol_V_umuC Location: 38827-39844 bp Feature: domain Description: PolY_Pol_V_umuC Location: 3 8827-3 9844 bp Feature: gene Location: 40054-40374 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Hol_Tox (pfam16935), RVT-GII, PolY_Pol_V_umuC (cd01700)

Seq: CP037429.1 Lactobacillus plantarum strain EM chromosome, complete genome (3184808 bp)
Overview 1 RT 1: 1260806-1267039 bp Neighborhood of RT #1 [1260806, 1267086] COG4932 RVT-GII P-type_ATPase_H eno Feature: gene Location: 1260806-1261054 bp Ori: QBK72664.1 Feature: domain Description: COG4932 Location: 1260830-1261049 bp Feature: domain Description: COG4 932 Location: 1260830-126104 9 bp Feature: gene Location: 1261109-1261366 bp Feature: gene Location: 1262251-1263271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1262254-1262371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1262254 -1262371 bp Feature: gene Location: 1263484-1265757 bp Feature: domain Description: P-type_ATPase_H Location: 1263514-1265722 bp Feature: domain Description: P-type_ATPase_H Location: 1263514 -1265722 bp Feature: gene Location: 1265797-1267086 bp Ori: QBK72666.1 Feature: domain Description: eno Location: 1265809-1267039 bp Feature: domain Description: eno Location: 1265809-1267039 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4932 (Uncharacterized surface anchored protein ), RVT-GII, P-type_ATPase_H (cd02076), eno (TIGR01060)