myRT

myRT report for GCA_004354225.1_ASM435422v1

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Seq: CP037891.1 Salmonella enterica strain FDA00009424 chromosome, complete genome (4611179 bp)
Overview 1 RT 1: 4482940-4490162 bp Neighborhood of RT #1 [4482940, 4490185] DUF5375 Prim_Zn_Ribbon COG3378 RVT-Retrons TIR_2 HTH_Tnp_1 CsgD Feature: gene Location: 4482940-4483260 bp Ori: QBM54736.1 Feature: domain Description: DUF5375 Location: 4482943-4483258 bp Feature: domain Description: DUF5375 Location: 4482943-4483258 bp Feature: gene Location: 4483275-4485608 bp Ori: QBM54737.1 Feature: domain Description: Prim_Zn_Ribbon Location: 4483365-4483473 bp Feature: domain Description: Prim_Zn_Ribbon Location: 4483365-4483473 bp Feature: domain Description: COG3378 Location: 4484091-4485600 bp Feature: domain Description: COG3378 Location: 4484091 -4485600 bp Feature: gene Location: 4486221-4487828 bp Ori: QBM55004.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4486512-4487109 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 448651 2-44871 09 bp Feature: domain Description: TIR_2 Location: 4487433-4487793 bp Feature: domain Description: TIR_2 Location: 4487433-4487793 bp Feature: gene Location: 4487976-4488315 bp Feature: domain Description: HTH_Tnp_1 Location: 4487991-4488108 bp Feature: domain Description: HTH_Tnp_1 Location: 4487991 -44881 08 bp Feature: gene Location: 4489568-4490185 bp Ori: QBM54738.1 Feature: domain Description: CsgD Location: 4489988-4490162 bp Feature: domain Description: CsgD Location: 4489988-44901 62 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5375 (pfam17345), Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), RVT-Retrons, TIR_2 (pfam13676), HTH_Tnp_1 (pfam01527), CsgD (COG2771)