myRT

myRT report for GCA_004359355.1_ASM435935v1

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Seq: CP032617.1 Bradyrhizobium diazoefficiens strain 110spc4 chromosome, complete genome (8910608 bp)
Overview 1 RT 1: 125765-132099 bp 2 RT 2: 1738594-1743098 bp 3 RT 3: 1919988-1926033 bp 4 RT 4: 2003905-2007518 bp 5 RT 5: 2053883-2060477 bp 6 RT 6: 2146654-2151404 bp Neighborhood of RT #1 [125765, 132188] RVT-UG12 PRK12904 SurA_N_3 SurA Neighborhood of RT #2 [1738594, 1743098] DDE_Tnp_1_2 RVT-GII DDE_5 Neighborhood of RT #3 [1919988, 1926767] COG4584 COG4584 IstB_IS21_ATP IstB_IS21 RVT-GII IS285 IS285 RVT-GII PHA00617 Resolvase Recombinase Zn_ribbon_recom Neighborhood of RT #4 [2003905, 2007998] DUF4096 RVT-GII DDE_5 Neighborhood of RT #5 [2053883, 2060482] DUF772 DDE_Tnp_1 DDE_Tnp_1 RVT-GII Resolvase Recombinase Zn_ribbon_recom PHA00617 RVT-GII GIIM PRK06215 Neighborhood of RT #6 [2146654, 2152056] RVT-GII GIIM HTH_Tnp_1 COG3547 Feature: gene Location: 125765-125956 bp Feature: gene Location: 125959-126621 bp Feature: gene Location: 126626-127678 bp Ori: QBP19172.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 127007-127463 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 1 27007-1 27463 bp Feature: gene Location: 128071-130911 bp Ori: QBP19173.1 Feature: domain Description: PRK12904 Location: 128083-130903 bp Feature: domain Description: PRK1 2904 Location: 1 28083-1 30903 bp Feature: gene Location: 131217-132188 bp Ori: QBP19174.1 Feature: domain Description: SurA_N_3 Location: 131313-131562 bp Feature: domain Description: SurA_N_3 Location: 1 31 31 3-1 31 562 bp Feature: domain Description: SurA Location: 131586-132099 bp Feature: domain Description: SurA Location: 1 31 586-1 32099 bp Feature: gene Location: 1738594-1739028 bp Ori: QBP20554.1 Feature: domain Description: DDE_Tnp_1_2 Location: 1738771-1739014 bp Feature: domain Description: DDE_Tnp_1 _2 Location: 1 738771 -1 73901 4 bp Feature: gene Location: 1739080-1739409 bp Feature: gene Location: 1739416-1740891 bp Ori: QBP20555.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1739824-1740514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 739824-1 74051 4 bp Feature: gene Location: 1740990-1742339 bp Ori: QBP20556.1 Feature: domain Description: DDE_5 Location: 1741068-1741860 bp Feature: domain Description: DDE_5 Location: 1 741 068-1 741 860 bp Feature: gene Location: 1742730-1743098 bp Feature: gene Location: 1919988-1921364 bp Feature: domain Description: COG4584 Location: 1920084-1920885 bp Feature: domain Description: COG4584 Location: 1 920084-1 920885 bp Feature: domain Description: COG4584 Location: 1920915-1921359 bp Feature: domain Description: COG4584 Location: 1 92091 5-1 921 359 bp Feature: gene Location: 1921373-1922104 bp Ori: QBP20708.1 Feature: domain Description: IstB_IS21_ATP Location: 1921394-1921478 bp Feature: domain Description: IstB_IS21 _ATP Location: 1 921 394-1 921 478 bp Feature: domain Description: IstB_IS21 Location: 1921484-1921931 bp Feature: domain Description: IstB_IS21 Location: 1 921 484-1 921 931 bp Feature: gene Location: 1922159-1922617 bp Ori: QBP20709.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1922381-1922480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 922381 -1 922480 bp Feature: gene Location: 1922875-1923318 bp Feature: domain Description: IS285 Location: 1922878-1922953 bp Feature: domain Description: IS285 Location: 1 922878-1 922953 bp Feature: domain Description: IS285 Location: 1923190-1923316 bp Feature: domain Description: IS285 Location: 1 9231 90-1 92331 6 bp Feature: gene Location: 1923588-1924334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1923942-1924335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 923942-1 924335 bp Feature: gene Location: 1924435-1924764 bp Ori: QBP20710.1 Feature: domain Description: PHA00617 Location: 1924561-1924747 bp Feature: domain Description: PHA0061 7 Location: 1 924561 -1 924747 bp Feature: gene Location: 1924905-1926767 bp Ori: QBP20711.1 Feature: domain Description: Resolvase Location: 1924917-1925358 bp Feature: domain Description: Resolvase Location: 1 92491 7-1 925358 bp Feature: domain Description: Recombinase Location: 1925445-1925805 bp Feature: domain Description: Recombinase Location: 1 925445-1 925805 bp Feature: domain Description: Zn_ribbon_recom Location: 1925847-1926033 bp Feature: domain Description: Zn_ribbon_recom Location: 1 925847-1 926033 bp Feature: gene Location: 2003905-2004661 bp Feature: domain Description: DUF4096 Location: 2003929-2004142 bp Feature: domain Description: DUF4096 Location: 2003929-20041 42 bp Feature: gene Location: 2004713-2005042 bp Feature: gene Location: 2005049-2006524 bp Ori: QBP20772.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2005457-2006147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2005457-20061 47 bp Feature: gene Location: 2006485-2006748 bp Feature: gene Location: 2006648-2007998 bp Feature: domain Description: DDE_5 Location: 2006726-2007518 bp Feature: domain Description: DDE_5 Location: 2006726-200751 8 bp Feature: gene Location: 2053883-2053987 bp Feature: gene Location: 2053984-2055330 bp Ori: QBP20805.1 Feature: domain Description: DUF772 Location: 2054143-2054359 bp Feature: domain Description: DUF772 Location: 20541 43-2054359 bp Feature: domain Description: DDE_Tnp_1 Location: 2054812-2055031 bp Feature: domain Description: DDE_Tnp_1 Location: 205481 2-2055031 bp Feature: domain Description: DDE_Tnp_1 Location: 2055103-2055220 bp Feature: domain Description: DDE_Tnp_1 Location: 20551 03-2055220 bp Feature: gene Location: 2055497-2056021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2055614-2056022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205561 4-2056022 bp Feature: gene Location: 2055920-2057677 bp Ori: QBP20806.1 Feature: domain Description: Resolvase Location: 2055932-2056373 bp Feature: domain Description: Resolvase Location: 2055932-2056373 bp Feature: domain Description: Recombinase Location: 2056460-2056820 bp Feature: domain Description: Recombinase Location: 2056460-2056820 bp Feature: domain Description: Zn_ribbon_recom Location: 2056862-2057048 bp Feature: domain Description: Zn_ribbon_recom Location: 2056862-2057048 bp Feature: gene Location: 2057818-2058147 bp Ori: QBP20807.1 Feature: domain Description: PHA00617 Location: 2057944-2058130 bp Feature: domain Description: PHA0061 7 Location: 2057944-20581 30 bp Feature: gene Location: 2058282-2058878 bp Ori: QBP20808.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2058294-2058507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2058294-2058507 bp Feature: domain Description: GIIM Note: maturase Location: 2058582-2058786 bp Feature: domain Description: GIIM Note: maturase Location: 2058582-2058786 bp Feature: gene Location: 2059050-2059160 bp Feature: gene Location: 2059691-2060482 bp Ori: QBP20809.1 Feature: domain Description: PRK06215 Location: 2059727-2060477 bp Feature: domain Description: PRK0621 5 Location: 2059727-2060477 bp Feature: gene Location: 2146654-2146887 bp Feature: gene Location: 2148217-2148399 bp Feature: gene Location: 2148396-2149640 bp Ori: QBP20887.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2148597-2149251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 48597-21 49251 bp Feature: domain Description: GIIM Note: maturase Location: 2149332-2149560 bp Feature: domain Description: GIIM Note: maturase Location: 21 49332-21 49560 bp Feature: gene Location: 2149817-2150921 bp Feature: domain Description: HTH_Tnp_1 Location: 2149823-2150030 bp Feature: domain Description: HTH_Tnp_1 Location: 21 49823-21 50030 bp Feature: gene Location: 2151011-2152056 bp Feature: domain Description: COG3547 Location: 2151029-2151404 bp Feature: domain Description: COG3547 Location: 21 51 029-21 51 404 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG12, PRK12904 (preprotein translocase subunit SecA; Reviewed), SurA_N_3 (pfam13624), SurA (COG0760), DDE_Tnp_1_2 (pfam13586), RVT-GII, DDE_5 (pfam13546), COG4584 (Transposase ), IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695)
IS285 (COG3328), PHA00617 (ribbon-helix-helix domain containing protein), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4096 (pfam13340), DUF772 (pfam05598), DDE_Tnp_1 (pfam01609), GIIM (pfam08388), PRK06215 (hypothetical protein; Provisional)
HTH_Tnp_1 (pfam01527), COG3547 (Transposase )