myRT

myRT report for GCA_004377995.2_ASM437799v2

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Seq: CP054388.1 Escherichia coli strain 1517k chromosome, complete genome (5164344 bp)
Overview 1 RT 1: 25144-29380 bp 2 RT 2: 776669-779476 bp 3 RT 3: 2191487-2196097 bp Neighborhood of RT #1 [25144, 29574] PHA02517 PHA02517 RVT-GII GIIM InsE IbrB_like Neighborhood of RT #2 [776669, 779476] RAYT IS285 RVT-GII HTH_Tnp_1 Neighborhood of RT #3 [2191487, 2196111] DcuC RVT-GII RVT-GII Asparaginase_2 DUF5339 Feature: gene Location: 25144-25464 bp Ori: QLK66993.1 Feature: domain Description: PHA02517 Location: 25153-25456 bp Feature: domain Description: PHA0251 7 Location: 251 53-25456 bp Feature: gene Location: 25573-26034 bp Feature: domain Description: PHA02517 Location: 25576-26026 bp Feature: domain Description: PHA0251 7 Location: 25576-26026 bp Feature: gene Location: 26115-27623 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26373-27105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26373-271 05 bp Feature: domain Description: GIIM Note: maturase Location: 27180-27399 bp Feature: domain Description: GIIM Note: maturase Location: 271 80-27399 bp Feature: gene Location: 28296-28993 bp Feature: domain Description: InsE Location: 28326-28590 bp Feature: domain Description: InsE Location: 28326-28590 bp Feature: gene Location: 29056-29574 bp Feature: domain Description: IbrB_like Location: 29080-29380 bp Feature: domain Description: IbrB_like Location: 29080-29380 bp Feature: gene Location: 776669-776797 bp Feature: domain Description: RAYT Location: 776672-776798 bp Feature: domain Description: RAYT Location: 776672-776798 bp Feature: gene Location: 776805-777472 bp Feature: domain Description: IS285 Location: 776835-777213 bp Feature: domain Description: IS285 Location: 776835-77721 3 bp Feature: gene Location: 777615-778077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 777627-777819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 777627-77781 9 bp Feature: gene Location: 778332-778581 bp Ori: QLK67612.1 Feature: domain Description: HTH_Tnp_1 Location: 778341-778554 bp Feature: domain Description: HTH_Tnp_1 Location: 778341 -778554 bp Feature: gene Location: 778581-779476 bp Feature: gene Location: 2191487-2192848 bp Ori: QLK68821.1 Gene: dcuC Feature: domain Description: DcuC Location: 2191490-2192822 bp Feature: domain Description: DcuC Location: 21 91 490-21 92822 bp Feature: gene Location: 2192901-2193128 bp Feature: gene Location: 2193494-2193940 bp Ori: QLK68823.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2193800-2193902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 93800-21 93902 bp Feature: gene Location: 2193892-2194056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2193895-2194051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 93895-21 94051 bp Feature: gene Location: 2194464-2195495 bp Ori: QLK68824.1 Feature: domain Description: Asparaginase_2 Location: 2194554-2195487 bp Feature: domain Description: Asparaginase_2 Location: 21 94554-21 95487 bp Feature: gene Location: 2195833-2196111 bp Ori: QLK68825.1 Feature: domain Description: DUF5339 Location: 2195896-2196097 bp Feature: domain Description: DUF5339 Location: 21 95896-21 96097 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), IbrB_like (cd16397), RAYT (COG1943), IS285 (COG3328), HTH_Tnp_1 (pfam01527), DcuC (TIGR00771), Asparaginase_2 (pfam01112)
DUF5339 (pfam17274)