myRT

myRT report for GCA_004421105.1_ASM442110v1

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Seq: CP038033.1 Nitrosococcus wardiae strain D1FHS chromosome, complete genome (4022640 bp)
Overview 1 RT 1: 446958-450741 bp 2 RT 2: 1157805-1164047 bp 3 RT 3: 3363357-3370864 bp 4 RT 4: 3609408-3611874 bp Neighborhood of RT #1 [446958, 450743] Pentapeptide Pentapeptide InsQ RVT-GII InsQ Neighborhood of RT #2 [1157805, 1164049] PRK09328 YbbK YbgA RVT-Retrons TIR_2 NT_Rel-Spo_like HigB Neighborhood of RT #3 [3363357, 3371028] TANGO2 PRK09256 RVT-GII GIIM YbjD YbjD YbjD RVT-Retrons Trypsin_2 DUF4372 DDE_Tnp_1 Neighborhood of RT #4 [3609408, 3611874] HigB-like_toxin VapI HTH_OrfB_IS605 RVT-GII GIIM SR_IS607_transposase_like Feature: gene Location: 446958-447419 bp Ori: QBQ53449.1 Feature: domain Description: Pentapeptide Location: 447066-447159 bp Feature: domain Description: Pentapeptide Location: 447066-4471 59 bp Feature: domain Description: Pentapeptide Location: 447207-447321 bp Feature: domain Description: Pentapeptide Location: 447207-447321 bp Feature: gene Location: 447494-447712 bp Feature: domain Description: InsQ Location: 447497-447683 bp Feature: domain Description: InsQ Location: 447497-447683 bp Feature: gene Location: 448257-449159 bp Ori: QBQ53450.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 448704-448899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 448704-448899 bp Feature: gene Location: 449190-449615 bp Feature: gene Location: 449802-450743 bp Feature: domain Description: InsQ Location: 449817-450741 bp Feature: domain Description: InsQ Location: 44981 7-450741 bp Feature: gene Location: 1157805-1158656 bp Ori: QBQ54047.1 Gene: prmC Feature: domain Description: PRK09328 Location: 1157823-1158645 bp Feature: domain Description: PRK09328 Location: 1 1 57823-1 1 58645 bp Feature: gene Location: 1158726-1159736 bp Ori: QBQ56461.1 Feature: domain Description: YbbK Location: 1158792-1159248 bp Feature: domain Description: YbbK Location: 1 1 58792-1 1 59248 bp Feature: domain Description: YbgA Location: 1159254-1159728 bp Feature: domain Description: YbgA Location: 1 1 59254-1 1 59728 bp Feature: gene Location: 1160337-1161884 bp Ori: QBQ54048.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1160556-1161165 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 60556-1 1 61 1 65 bp Feature: domain Description: TIR_2 Location: 1161495-1161846 bp Feature: domain Description: TIR_2 Location: 1 1 61 495-1 1 61 846 bp Feature: gene Location: 1162185-1163315 bp Ori: QBQ54049.1 Feature: domain Description: NT_Rel-Spo_like Location: 1162353-1162710 bp Feature: domain Description: NT_Rel-Spo_like Location: 1 1 62353-1 1 6271 0 bp Feature: gene Location: 1163768-1164049 bp Ori: QBQ54050.1 Feature: domain Description: HigB Location: 1163771-1164047 bp Feature: domain Description: HigB Location: 1 1 63771 -1 1 64047 bp Feature: gene Location: 3363357-3364115 bp Ori: QBQ55829.1 Feature: domain Description: TANGO2 Location: 3363360-3363852 bp Feature: domain Description: TANGO2 Location: 3363360-3363852 bp Feature: gene Location: 3364115-3364540 bp Ori: QBQ56614.1 Feature: domain Description: PRK09256 Location: 3364118-3364520 bp Feature: domain Description: PRK09256 Location: 33641 1 8-3364520 bp Feature: gene Location: 3364951-3365658 bp Ori: QBQ55830.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3364963-3365221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3364963-3365221 bp Feature: domain Description: GIIM Note: maturase Location: 3365266-3365467 bp Feature: domain Description: GIIM Note: maturase Location: 3365266-3365467 bp Feature: gene Location: 3365776-3367506 bp Ori: QBQ55831.1 Feature: domain Description: YbjD Location: 3365779-3366004 bp Feature: domain Description: YbjD Location: 3365779-3366004 bp Feature: domain Description: YbjD Location: 3366544-3366856 bp Feature: domain Description: YbjD Location: 3366544-3366856 bp Feature: domain Description: YbjD Location: 3367015-3367270 bp Feature: domain Description: YbjD Location: 336701 5-3367270 bp Feature: gene Location: 3367774-3369417 bp Ori: QBQ55832.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3367906-3368503 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3367906-3368503 bp Feature: domain Description: Trypsin_2 Location: 3368899-3369322 bp Feature: domain Description: Trypsin_2 Location: 3368899-3369322 bp Feature: gene Location: 3369674-3369880 bp Feature: gene Location: 3369877-3371028 bp Ori: QBQ56615.1 Feature: domain Description: DUF4372 Location: 3369886-3370102 bp Feature: domain Description: DUF4372 Location: 3369886-33701 02 bp Feature: domain Description: DDE_Tnp_1 Location: 3370306-3370864 bp Feature: domain Description: DDE_Tnp_1 Location: 3370306-3370864 bp Feature: gene Location: 3609408-3609686 bp Ori: QBQ56013.1 Feature: domain Description: HigB-like_toxin Location: 3609420-3609684 bp Feature: domain Description: HigB-like_toxin Location: 3609420-3609684 bp Feature: gene Location: 3609696-3609983 bp Ori: QBQ56633.1 Gene: higA Feature: domain Description: VapI Location: 3609699-3609954 bp Feature: domain Description: VapI Location: 3609699-3609954 bp Feature: gene Location: 3610054-3610899 bp Ori: QBQ56014.1 Feature: domain Description: HTH_OrfB_IS605 Location: 3610081-3610174 bp Feature: domain Description: HTH_OrfB_IS605 Location: 361 0081 -361 01 74 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3610177-3610453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361 01 77-361 0453 bp Feature: domain Description: GIIM Note: maturase Location: 3610501-3610720 bp Feature: domain Description: GIIM Note: maturase Location: 361 0501 -361 0720 bp Feature: gene Location: 3610889-3611287 bp Ori: QBQ56015.1 Feature: domain Description: SR_IS607_transposase_like Location: 3610934-3611285 bp Feature: domain Description: SR_IS607_transposase_like Location: 361 0934-361 1 285 bp Feature: gene Location: 3611629-3611874 bp Sorry, your browser 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Associated domains:myRT Pentapeptide (pfam00805), InsQ (COG0675), RVT-GII, PRK09328 (N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional), YbbK (COG1683), YbgA (COG3272), RVT-Retrons, TIR_2 (pfam13676), NT_Rel-Spo_like (cd05399), HigB (COG4680)
TANGO2 (pfam05742), PRK09256 (aminoacyl-tRNA hydrolase), GIIM (pfam08388), YbjD (COG3593), Trypsin_2 (pfam13365), DUF4372 (pfam14294), DDE_Tnp_1 (pfam01609), HigB-like_toxin (pfam05015), VapI (COG3093), HTH_OrfB_IS605 (pfam12323)
SR_IS607_transposase_like (cd03769)