myRT

myRT report for GCA_004564175.1_ASM456417v1

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Seq: CP020495.1 Escherichia coli strain 103 chromosome, complete genome (5162123 bp)
Overview 1 RT 1: 850246-853963 bp 2 RT 2: 3270769-3275355 bp 3 RT 3: 3977680-3984060 bp 4 RT 4: 4435443-4438838 bp 5 RT 5: 4442274-4445630 bp 6 RT 6: 4605869-4609452 bp 7 RT 7: 4634946-4640286 bp Neighborhood of RT #1 [850246, 854184] InsE PHA02517 RVT-GII GIIM PHA02517 NotI Neighborhood of RT #2 [3270769, 3275355] Q FRG RVT-Retrons HTH_XRE Neighborhood of RT #3 [3977680, 3984060] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Neighborhood of RT #4 [4435443, 4438837] COG2085 PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #5 [4442274, 4446059] DUF2254 PHA02517 RVT-GII GIIM InsE Neighborhood of RT #6 [4605869, 4609451] InsE PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #7 [4634946, 4640309] RVT-GII RVT-GII GIIM YesM YesN YesN Feature: gene Location: 850246-850962 bp Feature: domain Description: InsE Location: 850249-850585 bp Feature: domain Description: InsE Location: 850249-850585 bp Feature: domain Description: PHA02517 Location: 850843-850963 bp Feature: domain Description: PHA0251 7 Location: 850843-850963 bp Feature: gene Location: 850955-851326 bp Feature: gene Location: 851620-853143 bp Ori: QBR65578.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 851893-852625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 851 893-852625 bp Feature: domain Description: GIIM Note: maturase Location: 852700-852898 bp Feature: domain Description: GIIM Note: maturase Location: 852700-852898 bp Feature: gene Location: 853233-853706 bp Feature: domain Description: PHA02517 Location: 853239-853704 bp Feature: domain Description: PHA0251 7 Location: 853239-853704 bp Feature: gene Location: 853750-854184 bp Feature: domain Description: NotI Location: 853777-853963 bp Feature: domain Description: NotI Location: 853777-853963 bp Feature: gene Location: 3270769-3271803 bp Ori: QBR67859.1 Feature: domain Description: Q Location: 3270772-3271795 bp Feature: domain Description: Q Location: 3270772-3271 795 bp Feature: gene Location: 3272316-3273680 bp Ori: QBR67860.1 Feature: domain Description: FRG Location: 3272883-3273168 bp Feature: domain Description: FRG Location: 3272883-32731 68 bp Feature: gene Location: 3273789-3274739 bp Ori: QBR67861.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3273969-3274512 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3273969-327451 2 bp Feature: gene Location: 3274705-3275025 bp Ori: QBR67862.1 Feature: domain Description: HTH_XRE Location: 3274720-3274879 bp Feature: domain Description: HTH_XRE Location: 3274720-3274879 bp Feature: gene Location: 3275062-3275355 bp Feature: gene Location: 3977680-3978600 bp Ori: QBR68474.1 Feature: domain Description: AbiEii Location: 3977722-3978463 bp Feature: domain Description: AbiEii Location: 3977722-3978463 bp Feature: gene Location: 3978587-3979390 bp Ori: QBR68475.1 Feature: domain Description: AbiEi_3_N Location: 3978620-3978881 bp Feature: domain Description: AbiEi_3_N Location: 3978620-3978881 bp Feature: domain Description: AbiEi_3 Location: 3978893-3979349 bp Feature: domain Description: AbiEi_3 Location: 3978893-3979349 bp Feature: gene Location: 3979685-3982894 bp Ori: QBR68476.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3980213-3980702 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 398021 3-3980702 bp Feature: domain Description: nitrilase Location: 3982208-3982805 bp Feature: domain Description: nitrilase Location: 3982208-3982805 bp Feature: gene Location: 3983241-3983711 bp Feature: gene Location: 3983902-3984060 bp Feature: gene Location: 4435443-4435856 bp Ori: QBR68881.1 Feature: domain Description: COG2085 Location: 4435542-4435689 bp Feature: domain Description: COG2085 Location: 4435542-4435689 bp Feature: gene Location: 4435783-4436270 bp Feature: domain Description: PHA02517 Location: 4435786-4435957 bp Feature: domain Description: PHA0251 7 Location: 4435786-4435957 bp Feature: gene Location: 4436351-4437874 bp Ori: QBR68882.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4436624-4437356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4436624-4437356 bp Feature: domain Description: GIIM Note: maturase Location: 4437431-4437629 bp Feature: domain Description: GIIM Note: maturase Location: 4437431 -4437629 bp Feature: gene Location: 4438168-4438599 bp Feature: gene Location: 4438532-4438837 bp Feature: domain Description: PHA02517 Location: 4438535-4438838 bp Feature: domain Description: PHA0251 7 Location: 4438535-4438838 bp Feature: gene Location: 4442274-4442687 bp Ori: QBR68887.1 Feature: domain Description: DUF2254 Location: 4442316-4442613 bp Feature: domain Description: DUF2254 Location: 444231 6-444261 3 bp Feature: gene Location: 4442622-4443110 bp Feature: domain Description: PHA02517 Location: 4442625-4443099 bp Feature: domain Description: PHA0251 7 Location: 4442625-4443099 bp Feature: gene Location: 4443191-4444714 bp Ori: QBR68888.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4443464-4444196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4443464-44441 96 bp Feature: domain Description: GIIM Note: maturase Location: 4444271-4444469 bp Feature: domain Description: GIIM Note: maturase Location: 4444271 -4444469 bp Feature: gene Location: 4445008-4445439 bp Feature: gene Location: 4445372-4446059 bp Feature: domain Description: InsE Location: 4445381-4445630 bp Feature: domain Description: InsE Location: 4445381 -4445630 bp Feature: gene Location: 4605869-4606188 bp Feature: domain Description: InsE Location: 4605878-4606163 bp Feature: domain Description: InsE Location: 4605878-46061 63 bp Feature: gene Location: 4606324-4606797 bp Feature: domain Description: PHA02517 Location: 4606330-4606795 bp Feature: domain Description: PHA0251 7 Location: 4606330-4606795 bp Feature: gene Location: 4606887-4608410 bp Ori: QBR69042.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4607160-4607892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46071 60-4607892 bp Feature: domain Description: GIIM Note: maturase Location: 4607967-4608165 bp Feature: domain Description: GIIM Note: maturase Location: 4607967-46081 65 bp Feature: gene Location: 4608704-4609075 bp Feature: gene Location: 4609068-4609451 bp Feature: domain Description: PHA02517 Location: 4609098-4609452 bp Feature: domain Description: PHA0251 7 Location: 4609098-4609452 bp Feature: gene Location: 4634946-4635851 bp Feature: gene Location: 4635825-4636112 bp Feature: gene Location: 4636337-4636876 bp Ori: QBR69069.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4636667-4636745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4636667-4636745 bp Feature: gene Location: 4636904-4637425 bp Ori: QBR69070.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4636910-4637192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 463691 0-46371 92 bp Feature: domain Description: GIIM Note: maturase Location: 4637240-4637420 bp Feature: domain Description: GIIM Note: maturase Location: 4637240-4637420 bp Feature: gene Location: 4638008-4639237 bp Ori: QBR69725.1 Feature: domain Description: YesM Location: 4638488-4639229 bp Feature: domain Description: YesM Location: 4638488-4639229 bp Feature: gene Location: 4639254-4640309 bp Ori: QBR69071.1 Feature: domain Description: YesN Location: 4639257-4639656 bp Feature: domain Description: YesN Location: 4639257-4639656 bp Feature: domain Description: YesN Location: 4639989-4640286 bp Feature: domain Description: YesN Location: 4639989-4640286 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), NotI (pfam12183), Q (PHA02536), FRG (smart00901), RVT-Retrons, HTH_XRE (smart00530), AbiEii (pfam08843)
AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), COG2085 (Predicted dinucleotide-binding enzyme ), DUF2254 (pfam10011), YesM (COG2972), YesN (COG4753)

Seq: CP020496.1 Escherichia coli strain 103 plasmid unnamed1, complete sequence (120668 bp)
Overview 1 RT 1: 6583-19423 bp 2 RT 2: 118988-121798 bp Neighborhood of RT #1 [6583, 19545] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc RVT_N RVT-GII GIIM HNHc AdoMet_MTases RVT_N RVT-GII GIIM HNHc DUF1380 Neighborhood of RT #2 [118988, 121833] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 6583-6816 bp Ori: QBR69754.1 Feature: domain Description: DUF905 Location: 6613-6811 bp Feature: domain Description: DUF905 Location: 6613-6811 bp Feature: gene Location: 6879-7376 bp Ori: QBR69755.1 Feature: domain Description: PRK13732 Location: 6882-7374 bp Feature: domain Description: PRK13732 Location: 6882 -7374 bp Feature: gene Location: 7526-9427 bp Ori: QBR69756.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7793-8624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7793-862 4 bp Feature: domain Description: Intron_maturas2 Location: 8738-8996 bp Feature: domain Description: Intron_maturas2 Location: 8738-8996 bp Feature: domain Description: HNHc Note: nucleases Location: 9170-9332 bp Feature: domain Description: HNHc Note: nucleases Location: 9170-9332 bp Feature: gene Location: 10105-10311 bp Feature: gene Location: 10313-10501 bp Feature: gene Location: 11283-12950 bp Ori: QBR69758.1 Gene: ltrA Feature: domain Description: RVT_N Location: 11331-11568 bp Feature: domain Description: RVT_N Location: 11331-11568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11619-12261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11619-12 2 61 bp Feature: domain Description: GIIM Note: maturase Location: 12312-12546 bp Feature: domain Description: GIIM Note: maturase Location: 12 312 -12 546 bp Feature: domain Description: HNHc Note: nucleases Location: 12756-12915 bp Feature: domain Description: HNHc Note: nucleases Location: 12 756-12 915 bp Feature: gene Location: 12928-13322 bp Feature: gene Location: 13303-13866 bp Ori: QBR69759.1 Feature: domain Description: AdoMet_MTases Location: 13465-13765 bp Feature: domain Description: AdoMet_MTases Location: 13465-13765 bp Feature: gene Location: 15779-15898 bp Feature: gene Location: 16060-16217 bp Feature: gene Location: 16954-18621 bp Ori: QBR69762.1 Gene: ltrA Feature: domain Description: RVT_N Location: 17002-17239 bp Feature: domain Description: RVT_N Location: 17002 -172 39 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17290-17932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172 90-17932 bp Feature: domain Description: GIIM Note: maturase Location: 17983-18217 bp Feature: domain Description: GIIM Note: maturase Location: 17983-182 17 bp Feature: domain Description: HNHc Note: nucleases Location: 18427-18586 bp Feature: domain Description: HNHc Note: nucleases Location: 1842 7-18586 bp Feature: gene Location: 18935-19126 bp Feature: gene Location: 19123-19545 bp Ori: QBR69764.1 Feature: domain Description: DUF1380 Location: 19126-19423 bp Feature: domain Description: DUF1380 Location: 1912 6-1942 3 bp Feature: gene Location: 118988-119194 bp Feature: gene Location: 119196-119384 bp Feature: gene Location: 120166-121833 bp Ori: QBR69848.1 Gene: ltrA Feature: domain Description: RVT_N Location: 120214-120451 bp Feature: domain Description: RVT_N Location: 12 02 14-12 0451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120502-121144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 0502 -12 1144 bp Feature: domain Description: GIIM Note: maturase Location: 121195-121429 bp Feature: domain Description: GIIM Note: maturase Location: 12 1195-12 142 9 bp Feature: domain Description: HNHc Note: nucleases Location: 121639-121798 bp Feature: domain Description: HNHc Note: nucleases Location: 12 1639-12 1798 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), RVT_N (pfam13655), GIIM (pfam08388), AdoMet_MTases (cl17173), DUF1380 (pfam07128)