myRT

myRT report for GCA_004766445.2_ASM476644v2

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Seq: CP041713.1 Legionella geestiana strain HL-0438-4026 chromosome, complete genome (2626338 bp)
Overview 1 RT 1: 60395-65288 bp 2 RT 2: 366573-374438 bp 3 RT 3: 1053471-1063057 bp 4 RT 4: 1965904-1970104 bp 5 RT 5: 2115091-2123104 bp 6 RT 6: 2129424-2136633 bp 7 RT 7: 2282631-2287761 bp Neighborhood of RT #1 [60395, 65302] Pentapeptide_4 Pentapeptide_4 RVT-GII GIIM DDE_Tnp_Tn3 Gln_ase Neighborhood of RT #2 [366573, 374467] YafK RVT-GII GIIM SppA PRK10865 Neighborhood of RT #3 [1053471, 1063530] DDE_Tnp_1 RVT-GII GIIM RVT-GII GIIM tppB GPHR_N Neighborhood of RT #4 [1965904, 1970104] PRK10638 PspE RVT-GII GIIM COG3293 COG3293 Neighborhood of RT #5 [2115091, 2123130] nit tldD RVT-GII GIIM YfgC Neighborhood of RT #6 [2129424, 2136653] KOG4391 RVT-GII GIIM OM_YfiO YchJ Neighborhood of RT #7 [2282631, 2287761] DUF493 DacC RVT-GII GIIM RlpA FtsN Feature: gene Location: 60395-60646 bp Feature: gene Location: 60653-61258 bp Ori: QDQ38948.1 Feature: domain Description: Pentapeptide_4 Location: 60749-60950 bp Feature: domain Description: Pentapeptide_4 Location: 60749-60950 bp Feature: domain Description: Pentapeptide_4 Location: 60956-61142 bp Feature: domain Description: Pentapeptide_4 Location: 60956-61 1 42 bp Feature: gene Location: 61376-62710 bp Ori: QDQ38949.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61661-62345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 661 -62345 bp Feature: domain Description: GIIM Note: maturase Location: 62435-62636 bp Feature: domain Description: GIIM Note: maturase Location: 62435-62636 bp Feature: gene Location: 63344-64246 bp Ori: QDQ38950.1 Feature: domain Description: DDE_Tnp_Tn3 Location: 63350-64190 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 63350-641 90 bp Feature: gene Location: 64367-65302 bp Ori: QDQ38951.1 Gene: glsA Feature: domain Description: Gln_ase Location: 64415-65288 bp Feature: domain Description: Gln_ase Location: 6441 5-65288 bp Feature: gene Location: 366573-367718 bp Feature: gene Location: 368244-368732 bp Ori: QDQ39181.1 Feature: domain Description: YafK Location: 368349-368655 bp Feature: domain Description: YafK Location: 368349-368655 bp Feature: gene Location: 368917-370251 bp Ori: QDQ39182.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 369202-369886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 369202-369886 bp Feature: domain Description: GIIM Note: maturase Location: 369976-370177 bp Feature: domain Description: GIIM Note: maturase Location: 369976-3701 77 bp Feature: gene Location: 370853-371806 bp Ori: QDQ39183.1 Feature: domain Description: SppA Location: 370907-371756 bp Feature: domain Description: SppA Location: 370907-371 756 bp Feature: gene Location: 371885-374467 bp Ori: QDQ39184.1 Gene: clpB Feature: domain Description: PRK10865 Location: 371888-374438 bp Feature: domain Description: PRK1 0865 Location: 371 888-374438 bp Feature: gene Location: 1053471-1054754 bp Feature: gene Location: 1054777-1055862 bp Ori: QDQ39761.1 Feature: domain Description: DDE_Tnp_1 Location: 1055077-1055650 bp Feature: domain Description: DDE_Tnp_1 Location: 1 055077-1 055650 bp Feature: gene Location: 1056745-1058079 bp Ori: QDQ39762.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1057030-1057714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 057030-1 05771 4 bp Feature: domain Description: GIIM Note: maturase Location: 1057804-1058005 bp Feature: domain Description: GIIM Note: maturase Location: 1 057804-1 058005 bp Feature: gene Location: 1058646-1059980 bp Ori: QDQ39763.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1058931-1059615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 058931 -1 05961 5 bp Feature: domain Description: GIIM Note: maturase Location: 1059705-1059906 bp Feature: domain Description: GIIM Note: maturase Location: 1 059705-1 059906 bp Feature: gene Location: 1060547-1061989 bp Ori: QDQ39764.1 Feature: domain Description: tppB Location: 1060568-1061981 bp Feature: domain Description: tppB Location: 1 060568-1 061 981 bp Feature: gene Location: 1062046-1063530 bp Ori: QDQ39765.1 Feature: domain Description: GPHR_N Location: 1062901-1063057 bp Feature: domain Description: GPHR_N Location: 1 062901 -1 063057 bp Feature: gene Location: 1965904-1966155 bp Ori: QDQ40502.1 Gene: grxC Feature: domain Description: PRK10638 Location: 1965907-1966153 bp Feature: domain Description: PRK1 0638 Location: 1 965907-1 9661 53 bp Feature: gene Location: 1966156-1966578 bp Ori: QDQ40503.1 Feature: domain Description: PspE Location: 1966267-1966573 bp Feature: domain Description: PspE Location: 1 966267-1 966573 bp Feature: gene Location: 1967248-1968582 bp Ori: QDQ40504.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1967533-1968217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 967533-1 96821 7 bp Feature: domain Description: GIIM Note: maturase Location: 1968307-1968508 bp Feature: domain Description: GIIM Note: maturase Location: 1 968307-1 968508 bp Feature: gene Location: 1968930-1969682 bp Feature: domain Description: COG3293 Location: 1968936-1969260 bp Feature: domain Description: COG3293 Location: 1 968936-1 969260 bp Feature: domain Description: COG3293 Location: 1969422-1969677 bp Feature: domain Description: COG3293 Location: 1 969422-1 969677 bp Feature: gene Location: 1970015-1970104 bp Feature: gene Location: 2115091-2115933 bp Ori: QDQ40609.1 Feature: domain Description: nit Location: 2115100-2115886 bp Feature: domain Description: nit Location: 21 1 51 00-21 1 5886 bp Feature: gene Location: 2115926-2117371 bp Ori: QDQ40610.1 Gene: tldD Feature: domain Description: tldD Location: 2115941-2117360 bp Feature: domain Description: tldD Location: 21 1 5941 -21 1 7360 bp Feature: gene Location: 2117954-2119288 bp Ori: QDQ40611.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2118239-2118923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 8239-21 1 8923 bp Feature: domain Description: GIIM Note: maturase Location: 2119013-2119214 bp Feature: domain Description: GIIM Note: maturase Location: 21 1 901 3-21 1 921 4 bp Feature: gene Location: 2119837-2121720 bp Feature: gene Location: 2121730-2123130 bp Ori: QDQ40613.1 Feature: domain Description: YfgC Location: 2121802-2123104 bp Feature: domain Description: YfgC Location: 21 21 802-21 231 04 bp Feature: gene Location: 2129424-2130260 bp Ori: QDQ40620.1 Feature: domain Description: KOG4391 Location: 2129448-2130210 bp Feature: domain Description: KOG4391 Location: 21 29448-21 3021 0 bp Feature: gene Location: 2130335-2132134 bp Feature: gene Location: 2132725-2134059 bp Ori: QDQ40622.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2133010-2133694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 3301 0-21 33694 bp Feature: domain Description: GIIM Note: maturase Location: 2133784-2133985 bp Feature: domain Description: GIIM Note: maturase Location: 21 33784-21 33985 bp Feature: gene Location: 2135367-2136149 bp Ori: QDQ40623.1 Feature: domain Description: OM_YfiO Location: 2135388-2136114 bp Feature: domain Description: OM_YfiO Location: 21 35388-21 361 1 4 bp Feature: gene Location: 2136171-2136653 bp Ori: QDQ41137.1 Feature: domain Description: YchJ Location: 2136180-2136633 bp Feature: domain Description: YchJ Location: 21 361 80-21 36633 bp Feature: gene Location: 2282631-2282897 bp Ori: QDQ40745.1 Feature: domain Description: DUF493 Location: 2282646-2282895 bp Feature: domain Description: DUF493 Location: 2282646-2282895 bp Feature: gene Location: 2282936-2284156 bp Ori: QDQ40746.1 Feature: domain Description: DacC Location: 2283053-2284145 bp Feature: domain Description: DacC Location: 2283053-22841 45 bp Feature: gene Location: 2284874-2286208 bp Ori: QDQ40747.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2285159-2285843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22851 59-2285843 bp Feature: domain Description: GIIM Note: maturase Location: 2285933-2286134 bp Feature: domain Description: GIIM Note: maturase Location: 2285933-22861 34 bp Feature: gene Location: 2286597-2287406 bp Ori: QDQ40748.1 Feature: domain Description: RlpA Location: 2286771-2287206 bp Feature: domain Description: RlpA Location: 2286771 -2287206 bp Feature: domain Description: FtsN Location: 2287275-2287383 bp Feature: domain Description: FtsN Location: 2287275-2287383 bp Feature: gene Location: 2287486-2287761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Pentapeptide_4 (pfam13599), RVT-GII, GIIM (pfam08388), DDE_Tnp_Tn3 (pfam01526), Gln_ase (TIGR03814), YafK (COG3034), SppA (COG0616), PRK10865 (ATP-dependent chaperone ClpB), DDE_Tnp_1 (pfam01609), tppB (PRK09584)
GPHR_N (pfam12537), PRK10638 (glutaredoxin 3; Provisional), PspE (COG0607), COG3293 (Transposase ), nit (cd07572), tldD (PRK10735), YfgC (COG4783), KOG4391 (KOG4391, Predicted alpha/beta hydrolase BEM46 ), OM_YfiO (TIGR03302), YchJ (COG3012)
DUF493 (pfam04359), DacC (COG1686), RlpA (COG0797), FtsN (COG3087)