myRT

myRT report for GCA_004768665.1_ASM476866v1

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Seq: CP038608.1 Salmonella enterica subsp. enterica serovar Senftenberg strain GTA-FD-2016-MI-02533-3 chromosome, complete genome (5120648 bp)
Overview 1 RT 1: 3152415-3156939 bp 2 RT 2: 3543317-3546555 bp Neighborhood of RT #1 [3152415, 3156939] COG3436 SPEC COG3436 RVT_N RVT-GII GIIM HNHc DDE_Tnp_IS66 DDE_Tnp_IS66_C Neighborhood of RT #2 [3543317, 3546555] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 3152415-3152762 bp Ori: QBY82445.1 Feature: domain Description: COG3436 Location: 3152421-3152757 bp Feature: domain Description: COG3436 Location: 31 52421 -31 52757 bp Feature: gene Location: 3152811-3153392 bp Feature: domain Description: SPEC Location: 3152826-3153051 bp Feature: domain Description: SPEC Location: 31 52826-31 53051 bp Feature: domain Description: COG3436 Location: 3153084-3153393 bp Feature: domain Description: COG3436 Location: 31 53084-31 53393 bp Feature: gene Location: 3153999-3155687 bp Ori: QBY82446.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3154047-3154290 bp Feature: domain Description: RVT_N Location: 31 54047-31 54290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3154335-3154974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 54335-31 54974 bp Feature: domain Description: GIIM Note: maturase Location: 3155031-3155265 bp Feature: domain Description: GIIM Note: maturase Location: 31 55031 -31 55265 bp Feature: domain Description: HNHc Note: nucleases Location: 3155481-3155643 bp Feature: domain Description: HNHc Note: nucleases Location: 31 55481 -31 55643 bp Feature: gene Location: 3155761-3156714 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3155764-3156562 bp Feature: domain Description: DDE_Tnp_IS66 Location: 31 55764-31 56562 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3156583-3156694 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 31 56583-31 56694 bp Feature: gene Location: 3156757-3156939 bp Feature: gene Location: 3543317-3543754 bp Feature: domain Description: PHA02517 Location: 3543419-3543755 bp Feature: domain Description: PHA0251 7 Location: 354341 9-3543755 bp Feature: gene Location: 3543750-3544118 bp Feature: gene Location: 3544427-3545935 bp Ori: QBY84332.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3544685-3545417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3544685-354541 7 bp Feature: domain Description: GIIM Note: maturase Location: 3545492-3545690 bp Feature: domain Description: GIIM Note: maturase Location: 3545492-3545690 bp Feature: gene Location: 3546016-3546195 bp Feature: domain Description: PHA02517 Location: 3546019-3546196 bp Feature: domain Description: PHA0251 7 Location: 354601 9-35461 96 bp Feature: gene Location: 3546343-3546555 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3436 (Transposase ), SPEC (smart00150), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), PHA02517 (putative transposase OrfB; Reviewed)