myRT

myRT report for GCA_004771135.1_ASM477113v1

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Seq: CP028321.1 Escherichia coli O18:H1 strain CFSAN067215 plasmid p0.1229_1, complete sequence (114229 bp)
Overview 1 RT 1: 86535-89443 bp 2 RT 2: 102597-106385 bp Neighborhood of RT #1 [86535, 89442] Sigma70_r4_2 Sigma70_r4_2 PRK10173 RVT-GII PHA02517 Neighborhood of RT #2 [102597, 106423] InsE RVT-GII GIIM PHA02517 InsE Feature: gene Location: 86535-87020 bp Ori: QBZ10716.1 Feature: domain Description: Sigma70_r4_2 Location: 86595-86667 bp Feature: domain Description: Sigma70_r4_2 Location: 86595-86667 bp Feature: domain Description: Sigma70_r4_2 Location: 86736-86796 bp Feature: domain Description: Sigma70_r4_2 Location: 86736-86796 bp Feature: gene Location: 87142-87682 bp Feature: domain Description: PRK10173 Location: 87145-87583 bp Feature: domain Description: PRK1 01 73 Location: 871 45-87583 bp Feature: gene Location: 87925-88428 bp Ori: QBZ10717.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88198-88270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 881 98-88270 bp Feature: gene Location: 88722-89093 bp Feature: gene Location: 89086-89442 bp Feature: domain Description: PHA02517 Location: 89095-89443 bp Feature: domain Description: PHA0251 7 Location: 89095-89443 bp Feature: gene Location: 102597-103336 bp Feature: domain Description: InsE Location: 102600-102936 bp Feature: domain Description: InsE Location: 1 02600-1 02936 bp Feature: gene Location: 103329-103700 bp Feature: gene Location: 103994-105517 bp Ori: QBZ10734.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104267-104999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 04267-1 04999 bp Feature: domain Description: GIIM Note: maturase Location: 105074-105272 bp Feature: domain Description: GIIM Note: maturase Location: 1 05074-1 05272 bp Feature: gene Location: 105607-105990 bp Feature: domain Description: PHA02517 Location: 105613-105946 bp Feature: domain Description: PHA0251 7 Location: 1 0561 3-1 05946 bp Feature: gene Location: 106019-106423 bp Ori: QBZ10735.1 Feature: domain Description: InsE Location: 106049-106385 bp Feature: domain Description: InsE Location: 1 06049-1 06385 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Sigma70_r4_2 (pfam08281), PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), GIIM (pfam08388)