myRT

myRT report for GCA_004795955.1_ASM479595v1

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Seq: CP034334.1 Wolbachia endosymbiont of Drosophila mauritiana strain wMau chromosome, complete genome (1273527 bp)
Overview 1 RT 1: 64408-68157 bp 2 RT 2: 374494-378491 bp 3 RT 3: 386001-390065 bp 4 RT 4: 428979-433333 bp 5 RT 5: 691568-694759 bp 6 RT 6: 733963-738038 bp 7 RT 7: 956499-966384 bp 8 RT 8: 1201626-1204932 bp Neighborhood of RT #1 [64408, 68157] RVT_N RVT-GII YkfC ANK ANK ANK Neighborhood of RT #2 [374494, 378491] dcd RVT_N RVT-GII YkfC Neighborhood of RT #3 [386001, 390065] FeS_assembly_P ParA ANK RVT_N RVT-GII YkfC Neighborhood of RT #4 [428979, 433333] recomb_XerD PRK06620 RVT_N RVT-GII YkfC Neighborhood of RT #5 [691568, 694759] PuuD PuuD Rve RVT-GII RVT-GII GIIM Neighborhood of RT #6 [733963, 738112] tatA ExoD RVT-GII Intron_maturas2 HNHc ExoD Neighborhood of RT #7 [956499, 966638] ANK ANK ANK Ank_4 ANK ANK ANK ANK PHA02741 RVT-GII Intron_maturas2 HNHc RVT-GII GIIM mutL HTH_XRE T_den_put_tspse HTH_XRE Neighborhood of RT #8 [1201626, 1204932] Phage_TAC_7 T_den_put_tspse RVT_N RVT-GII YkfC Feature: gene Location: 64408-64608 bp Feature: gene Location: 64769-65033 bp Feature: gene Location: 65042-66589 bp Ori: QCB62166.1 Gene: ltrA Feature: domain Description: RVT_N Location: 65093-65336 bp Feature: domain Description: RVT_N Location: 65093-65336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65381-66032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65381 -66032 bp Feature: domain Description: YkfC Location: 66032-66365 bp Feature: domain Description: YkfC Location: 66032-66365 bp Feature: gene Location: 66709-67641 bp Feature: domain Description: ANK Location: 67018-67216 bp Feature: domain Description: ANK Location: 6701 8-6721 6 bp Feature: domain Description: ANK Location: 67240-67321 bp Feature: domain Description: ANK Location: 67240-67321 bp Feature: domain Description: ANK Location: 67336-67639 bp Feature: domain Description: ANK Location: 67336-67639 bp Feature: gene Location: 67669-68157 bp Feature: gene Location: 374494-375051 bp Ori: QCB62422.1 Feature: domain Description: dcd Location: 374503-375040 bp Feature: domain Description: dcd Location: 374503-375040 bp Feature: gene Location: 375057-376070 bp Feature: gene Location: 376301-377848 bp Ori: QCB62424.1 Gene: ltrA Feature: domain Description: RVT_N Location: 376352-376595 bp Feature: domain Description: RVT_N Location: 376352-376595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376640-377291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376640-377291 bp Feature: domain Description: YkfC Location: 377291-377624 bp Feature: domain Description: YkfC Location: 377291 -377624 bp Feature: gene Location: 377857-378121 bp Feature: gene Location: 378282-378491 bp Feature: gene Location: 386001-387020 bp Ori: QCB62428.1 Feature: domain Description: FeS_assembly_P Location: 386043-386226 bp Feature: domain Description: FeS_assembly_P Location: 386043-386226 bp Feature: domain Description: ParA Location: 386286-386994 bp Feature: domain Description: ParA Location: 386286-386994 bp Feature: gene Location: 387100-387762 bp Ori: QCB62429.1 Feature: domain Description: ANK Location: 387280-387754 bp Feature: domain Description: ANK Location: 387280-387754 bp Feature: gene Location: 387881-389428 bp Ori: QCB62430.1 Gene: ltrA Feature: domain Description: RVT_N Location: 387932-388175 bp Feature: domain Description: RVT_N Location: 387932-3881 75 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 388220-388871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 388220-388871 bp Feature: domain Description: YkfC Location: 388871-389204 bp Feature: domain Description: YkfC Location: 388871 -389204 bp Feature: gene Location: 389437-389701 bp Feature: gene Location: 389862-390065 bp Feature: gene Location: 428979-429965 bp Ori: QCB62469.1 Feature: domain Description: recomb_XerD Location: 429030-429945 bp Feature: domain Description: recomb_XerD Location: 429030-429945 bp Feature: gene Location: 430337-430972 bp Ori: QCB62470.1 Feature: domain Description: PRK06620 Location: 430361-430955 bp Feature: domain Description: PRK06620 Location: 430361 -430955 bp Feature: gene Location: 431149-432696 bp Ori: QCB62471.1 Gene: ltrA Feature: domain Description: RVT_N Location: 431200-431443 bp Feature: domain Description: RVT_N Location: 431 200-431 443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431488-432139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431 488-4321 39 bp Feature: domain Description: YkfC Location: 432139-432472 bp Feature: domain Description: YkfC Location: 4321 39-432472 bp Feature: gene Location: 432705-432969 bp Feature: gene Location: 433130-433333 bp Feature: gene Location: 691568-692506 bp Ori: QCB62652.1 Feature: domain Description: PuuD Location: 691958-692198 bp Feature: domain Description: PuuD Location: 691 958-6921 98 bp Feature: domain Description: PuuD Location: 692312-692453 bp Feature: domain Description: PuuD Location: 69231 2-692453 bp Feature: gene Location: 692698-693148 bp Feature: domain Description: Rve Location: 692761-693031 bp Feature: domain Description: Rve Location: 692761 -693031 bp Feature: gene Location: 693311-693490 bp Ori: QCB62653.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 693314-693440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69331 4-693440 bp Feature: gene Location: 693497-693700 bp Ori: QCB63127.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 693503-693689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 693503-693689 bp Feature: gene Location: 693795-694151 bp Ori: QCB62654.1 Feature: domain Description: GIIM Note: maturase Location: 693807-693990 bp Feature: domain Description: GIIM Note: maturase Location: 693807-693990 bp Feature: gene Location: 694339-694759 bp Feature: gene Location: 733963-734130 bp Ori: QCB62677.1 Gene: tatA Feature: domain Description: tatA Location: 733981-734104 bp Feature: domain Description: tatA Location: 733981 -7341 04 bp Feature: gene Location: 734264-734755 bp Feature: domain Description: ExoD Location: 734309-734756 bp Feature: domain Description: ExoD Location: 734309-734756 bp Feature: gene Location: 734859-736652 bp Ori: QCB62678.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 735126-735915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7351 26-73591 5 bp Feature: domain Description: Intron_maturas2 Location: 736008-736269 bp Feature: domain Description: Intron_maturas2 Location: 736008-736269 bp Feature: domain Description: HNHc Note: nucleases Location: 736425-736605 bp Feature: domain Description: HNHc Note: nucleases Location: 736425-736605 bp Feature: gene Location: 737186-737341 bp Feature: gene Location: 737456-738112 bp Ori: QCB62679.1 Feature: domain Description: ExoD Location: 737501-738038 bp Feature: domain Description: ExoD Location: 737501 -738038 bp Feature: gene Location: 956499-959099 bp Ori: QCB62842.1 Feature: domain Description: ANK Location: 956565-956676 bp Feature: domain Description: ANK Location: 956565-956676 bp Feature: domain Description: ANK Location: 956685-957051 bp Feature: domain Description: ANK Location: 956685-957051 bp Feature: domain Description: ANK Location: 957195-957573 bp Feature: domain Description: ANK Location: 9571 95-957573 bp Feature: domain Description: Ank_4 Location: 957654-957774 bp Feature: domain Description: Ank_4 Location: 957654-957774 bp Feature: domain Description: ANK Location: 957807-958107 bp Feature: domain Description: ANK Location: 957807-9581 07 bp Feature: domain Description: ANK Location: 958113-958374 bp Feature: domain Description: ANK Location: 9581 1 3-958374 bp Feature: domain Description: ANK Location: 958392-958647 bp Feature: domain Description: ANK Location: 958392-958647 bp Feature: domain Description: ANK Location: 958686-958851 bp Feature: domain Description: ANK Location: 958686-958851 bp Feature: domain Description: PHA02741 Location: 958866-959034 bp Feature: domain Description: PHA02741 Location: 958866-959034 bp Feature: gene Location: 959285-959521 bp Feature: gene Location: 959578-961371 bp Ori: QCB62844.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 959845-960634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 959845-960634 bp Feature: domain Description: Intron_maturas2 Location: 960727-960988 bp Feature: domain Description: Intron_maturas2 Location: 960727-960988 bp Feature: domain Description: HNHc Note: nucleases Location: 961144-961324 bp Feature: domain Description: HNHc Note: nucleases Location: 961 1 44-961 324 bp Feature: gene Location: 961929-963176 bp Ori: QCB62845.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 962133-962790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9621 33-962790 bp Feature: domain Description: GIIM Note: maturase Location: 962874-963099 bp Feature: domain Description: GIIM Note: maturase Location: 962874-963099 bp Feature: gene Location: 963841-965631 bp Ori: QCB62846.1 Gene: mutL Feature: domain Description: mutL Location: 963844-965626 bp Feature: domain Description: mutL Location: 963844-965626 bp Feature: gene Location: 965700-966638 bp Ori: QCB62847.1 Feature: domain Description: HTH_XRE Location: 965751-965922 bp Feature: domain Description: HTH_XRE Location: 965751 -965922 bp Feature: domain Description: T_den_put_tspse Location: 965982-966168 bp Feature: domain Description: T_den_put_tspse Location: 965982-9661 68 bp Feature: domain Description: HTH_XRE Location: 966213-966384 bp Feature: domain Description: HTH_XRE Location: 96621 3-966384 bp Feature: gene Location: 1201626-1201880 bp Ori: QCB63027.1 Feature: domain Description: Phage_TAC_7 Location: 1201638-1201857 bp Feature: domain Description: Phage_TAC_7 Location: 1 201 638-1 201 857 bp Feature: gene Location: 1202014-1202754 bp Ori: QCB63028.1 Feature: domain Description: T_den_put_tspse Location: 1202140-1202734 bp Feature: domain Description: T_den_put_tspse Location: 1 2021 40-1 202734 bp Feature: gene Location: 1202751-1204298 bp Ori: QCB63029.1 Gene: ltrA Feature: domain Description: RVT_N Location: 1202802-1203045 bp Feature: domain Description: RVT_N Location: 1 202802-1 203045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1203090-1203741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 203090-1 203741 bp Feature: domain Description: YkfC Location: 1203741-1204074 bp Feature: domain Description: YkfC Location: 1 203741 -1 204074 bp Feature: gene Location: 1204307-1204571 bp Feature: gene Location: 1204732-1204932 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), ANK (smart00248), dcd (PRK00416), FeS_assembly_P (pfam01883), ParA (pfam10609), recomb_XerD (TIGR02225), PRK06620 (hypothetical protein; Validated), PuuD (COG2071)
Rve (COG3316), GIIM (pfam08388), tatA (PRK14861), ExoD (pfam06055), Intron_maturas2 (pfam01348), HNHc (smart00507), Ank_4 (pfam13637), PHA02741 (hypothetical protein; Provisional), mutL (PRK00095), HTH_XRE (smart00530)
T_den_put_tspse (TIGR01784), Phage_TAC_7 (pfam10109)