myRT

myRT report for GCA_004798725.1_ASM479872v1

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Seq: CP039287.1 Cupriavidus necator H16 chromosome 1, complete sequence (4049965 bp)
Overview 1 RT 1: 968609-976257 bp 2 RT 2: 2699731-2706136 bp Neighborhood of RT #1 [968609, 976289] RVT-UG1 STKc_PknB_like Neighborhood of RT #2 [2699731, 2706210] ABC_ATPase ABC_ATPase RVT-Retrons DUF262 HEPN_RiboL-PSP Feature: gene Location: 968609-969187 bp Feature: gene Location: 969231-970109 bp Feature: gene Location: 970227-974003 bp Ori: QCB99947.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 970863-971394 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 970863-971 394 bp Feature: gene Location: 974175-975380 bp Feature: gene Location: 975444-976289 bp Ori: QCB99949.1 Feature: domain Description: STKc_PknB_like Location: 975489-976257 bp Feature: domain Description: STKc_PknB_like Location: 975489-976257 bp Feature: gene Location: 2699731-2700558 bp Feature: gene Location: 2700601-2701929 bp Ori: QCC01367.1 Feature: domain Description: ABC_ATPase Location: 2700661-2700787 bp Feature: domain Description: ABC_ATPase Location: 2700661 -2700787 bp Feature: domain Description: ABC_ATPase Location: 2701153-2701384 bp Feature: domain Description: ABC_ATPase Location: 2701 1 53-2701 384 bp Feature: gene Location: 2701933-2702859 bp Ori: QCC02690.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2702014-2702572 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 270201 4-2702572 bp Feature: gene Location: 2703930-2705333 bp Ori: QCC01368.1 Feature: domain Description: DUF262 Location: 2704350-2704758 bp Feature: domain Description: DUF262 Location: 2704350-2704758 bp Feature: gene Location: 2705341-2706210 bp Ori: QCC01369.1 Feature: domain Description: HEPN_RiboL-PSP Location: 2705500-2706136 bp Feature: domain Description: HEPN_RiboL-PSP Location: 2705500-27061 36 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG1, STKc_PknB_like (cd14014), ABC_ATPase (pfam09818), RVT-Retrons, DUF262 (pfam03235), HEPN_RiboL-PSP (pfam18735)

Seq: CP039289.1 Cupriavidus necator H16 plasmid pHG1, complete sequence (452139 bp)
Overview 1 RT 1: 21335-26562 bp Neighborhood of RT #1 [21335, 26612] nico DUF772 RVT-GII DDE_Tnp_1 PRK09293 Feature: gene Location: 21335-22390 bp Ori: QCC05309.1 Feature: domain Description: nico Location: 21491-22331 bp Feature: domain Description: nico Location: 2 1491-2 2 331 bp Feature: gene Location: 22933-23466 bp Feature: domain Description: DUF772 Location: 23098-23323 bp Feature: domain Description: DUF772 Location: 2 3098-2 332 3 bp Feature: gene Location: 23973-25228 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24186-24789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 4186-2 4789 bp Feature: gene Location: 25302-25745 bp Feature: domain Description: DDE_Tnp_1 Location: 25305-25704 bp Feature: domain Description: DDE_Tnp_1 Location: 2 5305-2 5704 bp Feature: gene Location: 25947-26612 bp Ori: QCC05310.1 Feature: domain Description: PRK09293 Location: 25971-26562 bp Feature: domain Description: PRK092 93 Location: 2 5971-2 6562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT nico (TIGR00802), DUF772 (pfam05598), RVT-GII, DDE_Tnp_1 (pfam01609), PRK09293 (class 1 fructose-bisphosphatase)