myRT

myRT report for GCA_004798765.1_ASM479876v1

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Seq: CP039279.1 Salmonella enterica strain GTA-FD-2016-MI-02533-1 chromosome, complete genome (5120962 bp)
Overview 1 RT 1: 3152459-3156983 bp 2 RT 2: 3543361-3546599 bp Neighborhood of RT #1 [3152459, 3156983] COG3436 SPEC COG3436 RVT_N RVT-GII GIIM HNHc DDE_Tnp_IS66 DDE_Tnp_IS66_C Neighborhood of RT #2 [3543361, 3546599] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 3152459-3152806 bp Ori: QCC12986.1 Feature: domain Description: COG3436 Location: 3152465-3152801 bp Feature: domain Description: COG3436 Location: 31 52465-31 52801 bp Feature: gene Location: 3152855-3153436 bp Feature: domain Description: SPEC Location: 3152870-3153095 bp Feature: domain Description: SPEC Location: 31 52870-31 53095 bp Feature: domain Description: COG3436 Location: 3153128-3153437 bp Feature: domain Description: COG3436 Location: 31 531 28-31 53437 bp Feature: gene Location: 3154043-3155731 bp Ori: QCC12987.1 Gene: ltrA Feature: domain Description: RVT_N Location: 3154091-3154334 bp Feature: domain Description: RVT_N Location: 31 54091 -31 54334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3154379-3155018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 54379-31 5501 8 bp Feature: domain Description: GIIM Note: maturase Location: 3155075-3155309 bp Feature: domain Description: GIIM Note: maturase Location: 31 55075-31 55309 bp Feature: domain Description: HNHc Note: nucleases Location: 3155525-3155687 bp Feature: domain Description: HNHc Note: nucleases Location: 31 55525-31 55687 bp Feature: gene Location: 3155805-3156758 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3155808-3156606 bp Feature: domain Description: DDE_Tnp_IS66 Location: 31 55808-31 56606 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3156627-3156738 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 31 56627-31 56738 bp Feature: gene Location: 3156801-3156983 bp Feature: gene Location: 3543361-3543798 bp Feature: domain Description: PHA02517 Location: 3543463-3543799 bp Feature: domain Description: PHA0251 7 Location: 3543463-3543799 bp Feature: gene Location: 3543794-3544162 bp Feature: gene Location: 3544471-3545979 bp Ori: QCC14874.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3544729-3545461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3544729-3545461 bp Feature: domain Description: GIIM Note: maturase Location: 3545536-3545734 bp Feature: domain Description: GIIM Note: maturase Location: 3545536-3545734 bp Feature: gene Location: 3546060-3546239 bp Feature: domain Description: PHA02517 Location: 3546063-3546240 bp Feature: domain Description: PHA0251 7 Location: 3546063-3546240 bp Feature: gene Location: 3546387-3546599 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3436 (Transposase ), SPEC (smart00150), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), PHA02517 (putative transposase OrfB; Reviewed)