myRT

myRT report for GCA_004798785.1_ASM479878v1

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Seq: CP039271.1 Salmonella enterica subsp. enterica serovar Senftenberg str. CFSAN004025 plasmid pCFSAN004025.1, complete sequence (324175 bp)
Overview 1 RT 1: 260594-263855 bp Neighborhood of RT #1 [260594, 264264] Sigma70_r4 PHA02517 RVT-GII GIIM InsE Feature: gene Location: 260594-260746 bp Feature: domain Description: Sigma70_r4 Location: 260621-260717 bp Feature: domain Description: Sigma70_r4 Location: 260621 -26071 7 bp Feature: gene Location: 260861-261317 bp Feature: domain Description: PHA02517 Location: 260864-261215 bp Feature: domain Description: PHA0251 7 Location: 260864-261 21 5 bp Feature: gene Location: 261398-262906 bp Ori: QCC19928.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 261656-262388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 261 656-262388 bp Feature: domain Description: GIIM Note: maturase Location: 262463-262661 bp Feature: domain Description: GIIM Note: maturase Location: 262463-262661 bp Feature: gene Location: 263215-263586 bp Feature: gene Location: 263579-264264 bp Feature: domain Description: InsE Location: 263591-263855 bp Feature: domain Description: InsE Location: 263591 -263855 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Sigma70_r4 (pfam04545), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: CP039270.1 Salmonella enterica subsp. enterica serovar Senftenberg str. CFSAN004025 chromosome, complete genome (4905224 bp)
Overview 1 RT 1: 4894338-4900277 bp Neighborhood of RT #1 [4894338, 4900339] PRK10216 PRK10473 RVT-Retrons PRK09692 PRK09692 Feature: gene Location: 4894338-4895297 bp Ori: QCC19407.1 Gene: yidZ Feature: domain Description: PRK10216 Location: 4894341-4895292 bp Feature: domain Description: PRK102 16 Location: 4894341-48952 92 bp Feature: gene Location: 4895266-4896453 bp Ori: QCC19408.1 Feature: domain Description: PRK10473 Location: 4895269-4896445 bp Feature: domain Description: PRK10473 Location: 48952 69-4896445 bp Feature: gene Location: 4897347-4898216 bp Ori: QCC19614.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4897392-4897977 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4897392 -4897977 bp Feature: gene Location: 4898282-4899244 bp Feature: gene Location: 4899569-4900339 bp Feature: domain Description: PRK09692 Location: 4899590-4899812 bp Feature: domain Description: PRK09692 Location: 4899590-4899812 bp Feature: domain Description: PRK09692 Location: 4900031-4900277 bp Feature: domain Description: PRK09692 Location: 4900031-49002 77 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10216 (HTH-type transcriptional regulator YidZ), PRK10473 (MdtL family multidrug efflux MFS transporter), RVT-Retrons, PRK09692 (Integrase; provisional)