myRT

myRT report for GCA_004799585.1_ASM479958v1

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Seq: CP037924.1 Shigella flexneri 5a str. M90T plasmid pWR100, complete sequence (232195 bp)
Overview 1 RT 1: 57500-60002 bp 2 RT 2: 149592-151598 bp 3 RT 3: 161355-163240 bp Neighborhood of RT #1 [57500, 60153] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Neighborhood of RT #2 [149592, 151600] Tra5 RVT-GII DDE_Tnp_IS66_C OrfB_IS605 Neighborhood of RT #3 [161355, 163240] RVT-GII Feature: gene Location: 57500-57679 bp Feature: domain Description: DDE_Tnp_IS66 Location: 57506-57662 bp Feature: domain Description: DDE_Tnp_IS66 Location: 57506-57662 bp Feature: gene Location: 57736-58155 bp Feature: gene Location: 58205-59383 bp Ori: QCC34323.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58352-59006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58352-59006 bp Feature: domain Description: GIIM Note: maturase Location: 59084-59306 bp Feature: domain Description: GIIM Note: maturase Location: 59084-59306 bp Feature: gene Location: 59466-59645 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 59511-59622 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5951 1 -59622 bp Feature: gene Location: 59675-60153 bp Feature: domain Description: COG3547 Location: 59693-60002 bp Feature: domain Description: COG3547 Location: 59693-60002 bp Feature: gene Location: 149592-149672 bp Feature: gene Location: 149691-149909 bp Feature: domain Description: Tra5 Location: 149700-149892 bp Feature: domain Description: Tra5 Location: 1 49700-1 49892 bp Feature: gene Location: 149922-151104 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150222-150771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 50222-1 50771 bp Feature: gene Location: 151178-151297 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 151220-151295 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 51 220-1 51 295 bp Feature: gene Location: 151430-151600 bp Feature: domain Description: OrfB_IS605 Location: 151436-151598 bp Feature: domain Description: OrfB_IS605 Location: 1 51 436-1 51 598 bp Feature: gene Location: 161355-161721 bp Feature: gene Location: 161714-161959 bp Feature: gene Location: 161916-162155 bp Ori: QCC34390.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 161922-162129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 61 922-1 621 29 bp Feature: gene Location: 162249-162427 bp Feature: gene Location: 162818-163240 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), Tra5 (COG2801), OrfB_IS605 (pfam01385)